Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1496

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1495: 9863 - Hypothetical Protein, at 444439 to 447391 9863 mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447917 to 450188 9864 mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450422 to 453504 9865

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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447,245 + -0.4
447,364 - -1.0
447,385 + -0.8
447,505 + -0.2
447,551 - 0.0
447,551 - -0.4
447,656 - -2.7
447,674 + -2.6
447,674 + -0.3
447,680 - 0.5
447,693 + -0.7
447,706 + 1.1
447,712 - -2.0
447,724 - 0.1
447,726 - -2.7
447,744 - -0.2
447,746 - 0.5
447,748 + -0.8
447,751 + 1.3
447,759 - -1.6
447,773 - -0.3
447,774 + 1.7
447,774 + -0.4
447,787 + 1.8
447,795 - -0.2
447,796 + 0.3
447,797 + -0.2
447,807 - 0.1
447,814 + 0.3
447,818 - -1.2
447,864 + 1.9
447,865 - 0.7
447,868 - -0.8
447,980 - 0.3
447,983 - 0.4
447,989 - 0.5
448,013 - -2.5
448,018 + 0.1
449,190 - 9864 mRNA_1496 0.56 0.9
449,514 - 9864 mRNA_1496 0.70 -1.1
449,638 + 9864 mRNA_1496 0.76 2.5
449,925 + 9864 mRNA_1496 0.88 -1.7
449,968 + 1.8
450,031 + -3.5
450,203 - 2.6
450,285 - 0.6
450,394 + 0.2
450,534 - 2.1
450,729 + -0.3
451,098 + 9865 mRNA_1497 0.22 2.2
451,117 - 9865 mRNA_1497 0.23 -1.2