Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1487

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414021 to 419409 9854 mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420051 to 423071 9855 mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423330 to 427670 9856

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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419,060 + -0.2
419,064 - 0.4
419,129 - 0.7
419,222 + -0.3
419,388 - -2.6
419,393 + 0.0
419,479 - 0.0
419,488 + -1.5
419,532 - -1.7
419,537 - 0.7
419,545 + 0.2
419,682 - -0.5
419,702 + -0.2
419,785 + -0.2
419,840 + -1.2
421,622 + 9855 mRNA_1487 0.52 0.3
423,352 - -0.4
423,472 - -0.7
423,604 - 1.3
423,724 - -1.2
423,778 + 9856 mRNA_1488 0.10 -0.2
423,835 + 9856 mRNA_1488 0.12 -1.0