Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1478

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1477: 9845 - Hypothetical Protein, at 397872 to 399169 9845 mRNA_1478: 9846 - Hypothetical Protein, at 399796 to 400850 9846 mRNA_1479: 9847 - ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098, at 401327 to 402379 9847

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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398,841 + 9845 mRNA_1477 0.75 0.0
398,842 - 9845 mRNA_1477 0.75 -0.2
398,870 + 9845 mRNA_1477 0.77 -0.4
398,888 + 9845 mRNA_1477 0.78 -0.8
398,962 + 9845 mRNA_1477 0.84 2.2
398,989 + 9845 mRNA_1477 0.86 -0.4
399,033 - 9845 mRNA_1477 0.89 1.9
399,033 + 9845 mRNA_1477 0.89 -0.2
399,035 + 9845 mRNA_1477 0.90 1.1
399,166 + 2.1
399,171 + -0.8
399,178 - 1.2
399,179 - -0.1
399,186 - -1.3
399,195 + 1.0
399,200 - -0.1
399,201 + 0.2
399,207 + -1.4
399,217 + -0.1
399,221 + -1.6
399,247 + -0.1
399,269 - 1.1
399,388 - 0.3
399,415 - -0.3
399,495 - -1.3
399,518 - -0.7
399,548 - 2.1
399,629 - 0.5
399,654 - -0.1
399,704 - -1.4
399,740 - 0.2
399,750 + -1.4
400,188 + 9846 mRNA_1478 0.37 1.4
400,225 - 9846 mRNA_1478 0.41 -0.0
400,237 - 9846 mRNA_1478 0.42 0.2
400,240 + 9846 mRNA_1478 0.42 2.0
400,271 + 9846 mRNA_1478 0.45 0.2
401,066 - 3.1
401,075 + 0.4
401,213 - 0.8
401,220 + -2.6
401,474 - 9847 mRNA_1479 0.14 0.2
401,597 + 9847 mRNA_1479 0.26 -0.5