Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1447

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1446: 9814 - BLAST Mucin-17 [Rhizoctonia solani], at 303145 to 306587 9814 mRNA_1447: 9815 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 307275 to 311482 9815

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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306,550 + 1.1
306,798 + 0.5
307,047 - -1.2
307,059 + 1.6
307,214 + 0.7
307,215 - 1.1
307,518 + -0.5
308,081 + 9815 mRNA_1447 0.19 1.8
308,361 + 9815 mRNA_1447 0.26 -0.7
308,391 + 9815 mRNA_1447 0.27 -0.3
308,397 + 9815 mRNA_1447 0.27 0.6
308,518 + 9815 mRNA_1447 0.30 -1.2
308,655 + 9815 mRNA_1447 0.33 -0.4
308,666 + 9815 mRNA_1447 0.33 0.3
308,815 - 9815 mRNA_1447 0.37 -1.2
308,992 + 9815 mRNA_1447 0.41 -0.3
309,073 - 9815 mRNA_1447 0.43 0.0
309,825 + 9815 mRNA_1447 0.61 -2.4
310,070 - 9815 mRNA_1447 0.66 0.2
310,124 + 9815 mRNA_1447 0.68 0.7
310,255 + 9815 mRNA_1447 0.71 -0.7
310,405 - 9815 mRNA_1447 0.74 -2.3
310,499 - 9815 mRNA_1447 0.77 -0.1
310,679 - 9815 mRNA_1447 0.81 0.1
310,871 - 9815 mRNA_1447 0.85 0.9
311,184 - 0.1
311,479 - -0.0
311,498 - 0.2
311,499 + -0.6
311,502 - 0.4
311,517 + 0.1
311,553 - -1.6
311,587 + 0.3
311,605 + 0.6
311,631 + 1.7
311,636 + -1.3
311,662 - 0.9
311,690 + -1.5
311,703 + 0.9
311,707 - -0.1
311,712 - -1.2
311,718 + 0.4
311,729 - 1.6
311,729 - 0.8
311,735 - 1.1
311,736 + 0.9
311,742 + 1.6
311,756 + 1.1
311,889 - 0.5
311,895 + 0.2
312,208 - 0.6
312,333 - -0.3
312,336 + 0.6
312,348 - 0.8