Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1421

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1420: 9788 - KOG4269 Rac GTPase-activating protein BCR/ABR, at 236131 to 238616 9788 mRNA_1421: 9789 - K06950 K06950 uncharacterized protein, at 239485 to 240342 9789 mRNA_1422: 9790 - K12236 NFX1 transcriptional repressor NF-X1, at 240937 to 244730 9790

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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238,630 + -0.1
238,779 + 1.3
238,902 - -0.1
238,908 - 0.5
238,921 - -0.5
239,066 - 0.4
239,073 + -0.5
239,084 - 0.4
239,209 - -1.7
239,214 - -1.2
239,233 + 0.5
239,358 + 0.4
239,427 - -1.2
239,429 - -0.6
239,458 + 1.1
239,469 + 1.4
239,503 + 0.7
239,535 + 0.6
239,633 - 9789 mRNA_1421 0.17 -0.5
239,956 + 9789 mRNA_1421 0.55 1.1
240,092 + 9789 mRNA_1421 0.71 0.2
240,093 - 9789 mRNA_1421 0.71 -0.8
240,669 - -0.1
240,814 - 0.5
240,820 - 0.6
240,821 - 0.4
240,823 - 0.3
240,823 + -0.1
240,823 - -1.3
240,826 + 0.6
240,830 + 1.8
240,832 + 0.0
240,834 + 0.6
240,835 + -1.2
240,846 + -1.7
240,852 - 0.0
240,853 - -1.8
240,853 + -0.0
240,853 - 0.0
240,854 + -1.7
240,857 + 0.5
240,858 - 1.0
240,863 + -0.2
240,865 + 0.5
240,870 + -0.3
240,875 - 2.2
240,876 + -0.2
240,878 - -0.4
240,887 + -0.0
240,971 - 1.2
241,007 + -0.2
241,143 + 0.3
241,167 + 0.1