Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1411

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1410: 9778 - K02920 RP-L36e, RPL36 large subunit ribosomal protein L36e, at 203700 to 204648 9778 mRNA_1411: 9779 - Hypothetical Protein, at 205641 to 206403 9779 mRNA_1412: 9780 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 206910 to 211871 9780

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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204,723 + 0.8
204,733 + -1.3
204,859 - 1.8
204,982 - -1.2
205,004 - -0.9
205,177 - -0.4
205,287 - -0.5
205,433 - -1.1
205,575 + 0.3
205,576 - -1.1
205,578 - 2.0
205,584 + -0.8
205,599 - -0.2
205,720 - 9779 mRNA_1411 0.10 0.3
205,741 + 9779 mRNA_1411 0.13 0.1
205,743 + 9779 mRNA_1411 0.13 -0.7
205,911 - 9779 mRNA_1411 0.35 -0.1
206,008 - 9779 mRNA_1411 0.48 -1.0
206,220 + 9779 mRNA_1411 0.76 -1.1
206,326 - 9779 mRNA_1411 0.90 0.8
206,327 - -0.8
206,353 + -1.1
206,458 - 0.2
206,471 + -0.0
206,608 - 0.5
206,633 + 0.7
206,803 - -0.8
206,968 + -0.2
207,082 - -0.5