Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1390

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1389: 9757 - Hypothetical Protein, at 155335 to 156152 9757 mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156559 to 159898 9758 mRNA_1391: 9759 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 160091 to 161111 9759

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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155,576 + 9757 mRNA_1389 0.29 -1.6
155,663 + 9757 mRNA_1389 0.40 1.3
155,667 - 9757 mRNA_1389 0.41 0.4
155,678 + 9757 mRNA_1389 0.42 -0.5
155,679 - 9757 mRNA_1389 0.42 -3.2
155,685 + 9757 mRNA_1389 0.43 0.2
155,687 - 9757 mRNA_1389 0.43 -0.8
155,690 - 9757 mRNA_1389 0.43 1.4
155,696 - 9757 mRNA_1389 0.44 1.0
155,715 - 9757 mRNA_1389 0.46 0.3
155,749 + 9757 mRNA_1389 0.51 -0.5
155,764 + 9757 mRNA_1389 0.52 -0.1
155,816 + 9757 mRNA_1389 0.59 -2.5
155,834 - 9757 mRNA_1389 0.61 0.2
155,853 + 9757 mRNA_1389 0.63 0.1
155,859 - 9757 mRNA_1389 0.64 -0.8
155,861 - 9757 mRNA_1389 0.64 1.4
155,861 + 9757 mRNA_1389 0.64 -1.2
155,861 - 9757 mRNA_1389 0.64 0.0
155,861 + 9757 mRNA_1389 0.64 -0.1
155,866 - 9757 mRNA_1389 0.65 2.4
155,872 + 9757 mRNA_1389 0.66 0.1
155,876 + 9757 mRNA_1389 0.66 1.2
155,878 + 9757 mRNA_1389 0.66 -2.4
155,887 + 9757 mRNA_1389 0.67 -1.0
155,998 - 9757 mRNA_1389 0.81 -0.2
156,021 + 9757 mRNA_1389 0.84 -0.5
156,156 + 0.3
156,157 - 2.2
156,173 + -0.1
156,723 - -1.9
156,876 - 0.1
156,887 + -0.4
156,905 + 9758 mRNA_1390 0.10 0.1
157,160 - 9758 mRNA_1390 0.18 0.7
158,039 - 9758 mRNA_1390 0.44 0.9
158,041 - 9758 mRNA_1390 0.44 -0.2
158,361 - 9758 mRNA_1390 0.54 1.8
158,371 + 9758 mRNA_1390 0.54 1.0
158,493 - 9758 mRNA_1390 0.58 -0.3
158,569 - 9758 mRNA_1390 0.60 -0.1
159,091 + 9758 mRNA_1390 0.76 -0.5
159,213 - 9758 mRNA_1390 0.79 -1.2
159,645 - 0.6
159,657 + -0.3
159,659 - -0.4
159,909 + 1.1
159,954 - 3.0
160,369 + 9759 mRNA_1391 0.27 -2.5
160,664 - 9759 mRNA_1391 0.56 -0.7
160,693 + 9759 mRNA_1391 0.59 -1.8
160,802 - 9759 mRNA_1391 0.70 -0.8
160,850 + 9759 mRNA_1391 0.74 -2.1