Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1375

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1374: 9742 - K01733 thrC threonine synthase, at 121119 to 123367 9742 mRNA_1375: 9743 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 123978 to 126769 9743 mRNA_1376: 9744 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SUPERFAMILY--SSF47459, at 127099 to 128886 9744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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123,367 + -2.0
123,542 + -0.8
123,647 - -1.7
123,653 + -0.8
123,680 - -0.3
123,797 + -1.0
123,803 - 1.2
123,809 - -2.1
123,822 + 0.2
123,838 - 0.1
123,859 - 1.4
123,868 + -0.2
123,997 + 0.3
124,003 - 0.4
124,006 - -3.3
124,049 - 0.3
124,119 - 0.7
124,719 - 9743 mRNA_1375 0.27 -1.0
125,435 + 9743 mRNA_1375 0.52 0.6
125,589 - 9743 mRNA_1375 0.58 0.8
125,630 + 9743 mRNA_1375 0.59 1.1
125,635 - 9743 mRNA_1375 0.59 -1.4
125,742 - 9743 mRNA_1375 0.63 -1.2
125,879 + 9743 mRNA_1375 0.68 0.3
126,006 - 9743 mRNA_1375 0.73 -0.0
126,047 - 9743 mRNA_1375 0.74 -1.2
126,483 + 9743 mRNA_1375 0.90 -0.2
126,493 + 0.5
126,605 - 0.5
126,623 + 0.9
126,915 - 0.6
127,262 - 0.3
127,337 + 9744 mRNA_1376 0.13 -0.6
127,528 + 9744 mRNA_1376 0.24 -0.6
127,765 + 9744 mRNA_1376 0.37 -1.2