Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1361

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1360: 9728 - K01054 MGLL acylglycerol lipase, at 88622 to 90157 9728 mRNA_1361: 9729 - Hypothetical Protein, at 90771 to 91579 9729 mRNA_1362: 9730 - K00507 SCD, desC stearoyl-CoA desaturase (Delta-9 desaturase), at 92515 to 94818 9730

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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89,965 + 9728 mRNA_1360 0.87 0.4
90,038 + -1.1
90,068 + -0.3
90,145 - 1.0
90,242 - 1.6
90,326 - -1.4
90,328 + -0.4
90,335 - 0.5
90,349 + 0.7
90,350 + 0.5
90,356 + 0.9
90,364 + 0.1
90,374 + -0.1
90,376 - -1.6
90,378 - 0.9
90,532 - -1.8
90,534 - -0.4
90,556 + -2.6
90,568 + 0.6
90,606 - -1.9
90,696 + -0.1
90,709 + -1.0
90,822 - -0.3
90,901 - 9729 mRNA_1361 0.16 1.9
91,118 - 9729 mRNA_1361 0.43 0.4
91,123 - 9729 mRNA_1361 0.44 -1.4
91,268 + 9729 mRNA_1361 0.61 -1.2
91,334 + 9729 mRNA_1361 0.70 0.1
91,554 - -0.2
91,689 + 0.6
91,699 + -1.1
91,714 + -2.8
91,818 - 1.9
91,935 - -1.6
91,935 - 1.4
91,938 + 0.1
91,959 - 0.9
91,978 - -0.9
92,007 + -2.2
92,008 + 0.3
92,008 + -0.7
92,010 + 0.7
92,027 + -0.4
92,058 - 0.5
92,090 - -2.2
92,094 + -0.2
92,105 - -1.0
92,128 + -0.8
92,131 - -0.8
92,142 - -0.8
92,143 + -0.7
92,155 + 0.3
92,162 - 0.7
92,176 - -0.1
92,206 + -0.7
92,212 + -0.9
92,212 - -0.9
92,221 - 1.7
92,255 - -2.2
92,270 - -1.4
92,272 - 0.3
92,282 - -0.4
92,285 + -0.3
92,291 + 2.2
92,295 - -0.1
92,302 - -1.3
92,308 + -0.8