Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1330

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1329: 9697 - HMMPfam-SUZ domain-PF12752,ProSiteProfiles-SUZ domain profile.-PS51673, at 8055 to 8960 9697 mRNA_1330: 9698 - HMMPfam-LCCL domain-PF03815,ProSiteProfiles-LCCL domain profile.-PS50820,SUPERFAMILY--SSF69848, at 9234 to 11606 9698 mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11969 to 15219 9699

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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8,393 - 9697 mRNA_1329 0.37 0.3
8,402 - 9697 mRNA_1329 0.38 0.6
8,435 - 9697 mRNA_1329 0.42 -1.8
8,577 + 9697 mRNA_1329 0.58 1.7
8,599 + 9697 mRNA_1329 0.60 0.5
8,603 + 9697 mRNA_1329 0.60 0.1
8,708 + 9697 mRNA_1329 0.72 0.1
8,856 - 9697 mRNA_1329 0.88 -0.1
8,864 - 9697 mRNA_1329 0.89 -0.3
9,016 - -0.0
9,048 - 0.9
9,057 - -0.8
9,182 + 0.3
9,299 - 1.5
9,321 - -0.3
9,448 + -1.2
9,472 - 9698 mRNA_1330 0.10 -0.7
9,597 - 9698 mRNA_1330 0.15 2.4
9,731 + 9698 mRNA_1330 0.21 0.0
9,864 + 9698 mRNA_1330 0.27 0.1
9,892 + 9698 mRNA_1330 0.28 -0.5
10,211 + 9698 mRNA_1330 0.41 -0.7
10,242 - 9698 mRNA_1330 0.42 -0.9
10,287 - 9698 mRNA_1330 0.44 -3.2
10,314 - 9698 mRNA_1330 0.46 -2.2
10,381 + 9698 mRNA_1330 0.48 -1.5
10,382 + 9698 mRNA_1330 0.48 2.4
10,395 - 9698 mRNA_1330 0.49 -2.3
10,480 - 9698 mRNA_1330 0.53 0.2
10,487 + 9698 mRNA_1330 0.53 1.4
10,744 + 9698 mRNA_1330 0.64 -2.0
11,171 - 9698 mRNA_1330 0.82 -0.6
11,207 - 9698 mRNA_1330 0.83 1.2
11,208 - 9698 mRNA_1330 0.83 0.0
11,222 + 9698 mRNA_1330 0.84 -0.2
11,517 - 2.8
11,521 - 0.6
11,556 - 0.4
11,591 + 2.3
11,637 + -0.6
11,673 - 0.7
11,675 - 0.1
11,679 - -0.5
11,680 + -0.7
11,689 + -2.2
11,693 + 0.6
11,695 - 1.0
11,698 + 2.5
11,699 + -3.2
11,706 - -0.7
11,707 + -0.2
11,714 + 1.1
11,819 + 1.2
11,820 + 0.4
11,821 - -2.4
11,822 - -0.4
11,832 - 0.3
11,879 + -0.3
12,292 + -0.2