Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1321

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1320: 9688 - K00384 trxB thioredoxin reductase (NADPH), at 921443 to 923748 9688 mRNA_1321: 9689 - K01687 ilvD dihydroxy-acid dehydratase, at 924621 to 927018 9689 mRNA_1322: 9690 - K11662 ACTR6, ARP6 actin-related protein 6, at 927422 to 929610 9690

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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923,664 - -1.3
923,669 + 0.8
923,681 - -1.3
923,684 + -0.6
923,688 + -0.5
923,691 - -0.3
923,699 - 0.0
923,699 - -0.0
923,704 - 1.4
923,705 - -1.1
923,709 + -0.6
923,709 + 1.8
923,710 + 1.3
923,724 + 0.5
923,817 + 0.6
923,916 - -0.1
923,925 - 1.4
923,930 - -0.0
923,939 - -0.1
923,943 + -0.0
923,950 + -1.1
923,955 + 0.5
923,963 + 0.2
923,964 + 0.8
923,970 - 0.4
923,970 - 1.7
923,975 + -0.3
923,979 - -1.3
924,100 + -0.7
924,163 + -0.3
924,251 - 1.0
926,269 - 9689 mRNA_1321 0.69 -0.7
927,097 - 0.0
927,241 - 1.7
927,277 + -0.5
927,319 - -1.2