Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1292

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1291: 9659 - KOG3350 Uncharacterized conserved protein, at 845100 to 846215 9659 mRNA_1292: 9660 - K10848 ERCC4, XPF DNA excision repair protein ERCC-4, at 846383 to 850419 9660 mRNA_1293: 9661 - Hypothetical Protein, at 850858 to 851999 9661

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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845,448 + 9659 mRNA_1291 0.31 1.8
845,880 - 9659 mRNA_1291 0.70 1.0
846,183 + 1.0
846,636 + 0.6
846,942 - 9660 mRNA_1292 0.14 -2.3
847,205 - 9660 mRNA_1292 0.20 -0.6
847,222 + 9660 mRNA_1292 0.21 0.3
847,772 + 9660 mRNA_1292 0.34 0.3
847,877 + 9660 mRNA_1292 0.37 1.6
848,237 + 9660 mRNA_1292 0.46 -0.3
848,511 + 9660 mRNA_1292 0.53 -1.9
848,525 - 9660 mRNA_1292 0.53 -0.8
848,672 - 9660 mRNA_1292 0.57 -1.0
849,014 + 9660 mRNA_1292 0.65 0.3
849,450 - 9660 mRNA_1292 0.76 1.3
849,688 - 9660 mRNA_1292 0.82 -2.8
849,740 + 9660 mRNA_1292 0.83 0.1
849,896 - 9660 mRNA_1292 0.87 0.8
850,122 - 1.3
850,141 - -2.7
850,148 + -0.8
850,290 - 1.7
850,299 + -1.2
850,307 + -0.3
850,325 - 0.7
850,344 + -1.3
850,420 + 0.0
850,487 + -3.0
850,546 - 0.2
850,602 - -0.7
850,740 - 0.4
850,743 - 0.5
850,744 - 0.7
850,884 + -0.3
850,936 + -0.3
851,035 + 9661 mRNA_1293 0.15 -1.4
851,206 - 9661 mRNA_1293 0.30 0.7