Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1268

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1267: 9635 - K00814 GPT, ALT alanine transaminase, at 793138 to 795041 9635 mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795406 to 796307 9636 mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796569 to 799890 9637

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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794,503 + 9635 mRNA_1267 0.72 0.7
794,534 + 9635 mRNA_1267 0.73 -0.2
794,652 - 9635 mRNA_1267 0.80 0.1
794,860 + -0.6
795,071 + 3.0
795,075 + -0.7
795,102 + -1.3
795,113 + -0.4
795,122 - -0.8
795,130 + 0.1
795,131 - -1.1
795,144 - -0.1
795,229 + -1.4
795,232 - 0.8
795,257 - -0.8
795,274 + -0.5
795,332 - -1.0
795,351 + 0.2
795,446 - 0.2
795,467 + 0.0
795,563 - 9636 mRNA_1268 0.17 -0.4
795,874 - 9636 mRNA_1268 0.52 0.4
795,916 - 9636 mRNA_1268 0.57 0.2
795,984 + 9636 mRNA_1268 0.64 1.9
796,039 + 9636 mRNA_1268 0.70 -0.5
796,170 - 9636 mRNA_1268 0.85 -0.3
796,274 + -0.1
796,275 - 0.7
796,310 + -1.8
796,316 + -1.0
796,356 + -1.6
796,591 - 0.0
796,597 + 0.1
796,615 - 1.1
796,751 + -2.2
796,771 + -0.1
796,840 + -0.3
797,178 - 9637 mRNA_1269 0.18 -0.1