Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1253

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1252: 9620 - BLAST glycosyltransferase family 22 protein [Mixia osmu..., at 757595 to 759040 9620 mRNA_1253: 9621 - K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2, at 759440 to 760414 9621 mRNA_1254: 9622 - K02150 ATPeV1E, ATP6E V-type H+-transporting ATPase subunit E, at 761130 to 762354 9622

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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758,495 - 9620 mRNA_1252 0.62 -0.1
758,536 + 9620 mRNA_1252 0.65 2.2
758,673 + 9620 mRNA_1252 0.75 -0.4
758,800 + 9620 mRNA_1252 0.83 -1.4
758,820 - 9620 mRNA_1252 0.85 -0.1
758,971 + -2.0
759,249 - 1.7
759,266 + 0.7
759,273 - 0.1
759,302 - 1.3
759,303 + -1.8
759,303 + -1.0
759,416 - -0.3
759,562 - 9621 mRNA_1253 0.13 1.8
759,567 + 9621 mRNA_1253 0.13 -0.4
759,653 - 9621 mRNA_1253 0.22 0.0
759,842 + 9621 mRNA_1253 0.41 1.1
760,233 + 9621 mRNA_1253 0.81 0.2
760,402 + 1.4
760,405 - -0.4
760,550 + 0.5
760,557 - 1.3
760,688 - 0.7