Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1252

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1251: 9619 - HMMPfam-Protein of unknown function (DUF2611)-PF11022, at 756531 to 757355 9619 mRNA_1252: 9620 - BLAST glycosyltransferase family 22 protein [Mixia osmu..., at 757595 to 759040 9620 mRNA_1253: 9621 - K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2, at 759440 to 760414 9621

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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756,647 + 9619 mRNA_1251 0.14 -1.0
756,671 + 9619 mRNA_1251 0.17 -2.3
756,786 + 9619 mRNA_1251 0.31 1.5
756,797 + 9619 mRNA_1251 0.32 -0.2
757,182 + 9619 mRNA_1251 0.79 0.3
757,183 - 9619 mRNA_1251 0.79 -1.5
757,490 + -1.1
757,563 + -0.2
757,647 - -0.2
757,692 - -2.6
757,944 + 9620 mRNA_1252 0.24 1.6
758,220 - 9620 mRNA_1252 0.43 -1.1
758,237 - 9620 mRNA_1252 0.44 -0.7
758,362 - 9620 mRNA_1252 0.53 -0.2
758,495 - 9620 mRNA_1252 0.62 -0.1
758,536 + 9620 mRNA_1252 0.65 2.2
758,673 + 9620 mRNA_1252 0.75 -0.4
758,800 + 9620 mRNA_1252 0.83 -1.4
758,820 - 9620 mRNA_1252 0.85 -0.1
758,971 + -2.0
759,249 - 1.7
759,266 + 0.7
759,273 - 0.1
759,302 - 1.3
759,303 + -1.8
759,303 + -1.0
759,416 - -0.3
759,562 - 9621 mRNA_1253 0.13 1.8
759,567 + 9621 mRNA_1253 0.13 -0.4
759,653 - 9621 mRNA_1253 0.22 0.0
759,842 + 9621 mRNA_1253 0.41 1.1