Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1232

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1231: 9599 - K11086 SNRPB, SMB small nuclear ribonucleoprotein B and B', at 709057 to 710079 9599 mRNA_1232: 9600 - K12177 COPS3, CSN3 COP9 signalosome complex subunit 3, at 710443 to 712961 9600 mRNA_1233: 9601 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 713188 to 714152 9601

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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710,572 + 1.6
710,809 + 9600 mRNA_1232 0.15 -0.8
710,843 - 9600 mRNA_1232 0.16 -0.5
710,881 - 9600 mRNA_1232 0.17 -0.5
711,721 - 9600 mRNA_1232 0.51 -2.7
711,729 + 9600 mRNA_1232 0.51 1.0
712,005 + 9600 mRNA_1232 0.62 2.2
712,275 - 9600 mRNA_1232 0.73 0.9
712,669 + 9600 mRNA_1232 0.88 0.2
713,010 - 0.0
713,053 + 0.6
713,132 + -0.8
713,289 - 9601 mRNA_1233 0.10 0.8