Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1205

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1204: 9572 - K11253 H3 histone H3, at 644516 to 645336 9572 mRNA_1205: 9573 - Hypothetical Protein, at 645858 to 646499 9573 mRNA_1206: 9574 - K00021 HMGCR hydroxymethylglutaryl-CoA reductase (NADPH), at 646745 to 651192 9574

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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644,878 - 9572 mRNA_1204 0.44 -1.4
644,901 + 9572 mRNA_1204 0.47 1.5
645,188 - 9572 mRNA_1204 0.82 -0.1
645,466 + -0.6
645,486 + 2.0
645,597 - 1.0
645,601 - -1.4
645,608 + -2.0
645,614 + -1.4
645,615 - 1.8
645,667 + 1.5
645,667 - 0.0
645,677 - -0.7
645,693 - -1.2
645,706 - 0.3
645,707 + -0.0
645,707 + -1.8
645,710 - 2.7
645,717 + 0.3
645,717 - -0.2
645,719 - -0.0
645,747 + 3.0
645,751 - -0.1
645,763 - 1.1
645,846 + 1.2
645,862 - -0.1
645,870 - 0.1
646,165 - 9573 mRNA_1205 0.48 0.2
646,195 - 9573 mRNA_1205 0.52 0.2
646,329 - 9573 mRNA_1205 0.73 -0.9
646,356 - 9573 mRNA_1205 0.78 2.3
646,358 + 9573 mRNA_1205 0.78 1.1
646,370 - 9573 mRNA_1205 0.80 0.2
646,375 - 9573 mRNA_1205 0.81 1.9
646,480 - -1.1
646,494 - 0.5
646,494 - -1.4
646,502 + 2.4
646,503 - -2.0
646,504 + 0.2
646,505 - 0.6
646,514 + 0.2
646,518 - 2.0
646,526 + 1.4
646,610 + -1.4
646,660 - -0.8