Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1186

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1185: 9553 - KOG1399 Flavin-containing monooxygenase, at 601404 to 603765 9553 mRNA_1186: 9554 - K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1, at 603862 to 607168 9554 mRNA_1187: 9555 - Hypothetical Protein, at 607459 to 608635 9555

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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602,908 + 9553 mRNA_1185 0.64 -3.9
602,911 - 9553 mRNA_1185 0.64 -2.7
602,920 - 9553 mRNA_1185 0.64 0.1
602,979 - 9553 mRNA_1185 0.67 -1.1
602,989 + 9553 mRNA_1185 0.67 0.5
603,066 + 9553 mRNA_1185 0.70 -0.9
603,262 - 9553 mRNA_1185 0.79 1.4
603,282 - 9553 mRNA_1185 0.80 -0.8
603,283 - 9553 mRNA_1185 0.80 2.2
603,283 - 9553 mRNA_1185 0.80 0.2
603,304 + 9553 mRNA_1185 0.80 -0.3
603,414 - 9553 mRNA_1185 0.85 -0.6
603,426 - 9553 mRNA_1185 0.86 1.6
603,526 - 9553 mRNA_1185 0.90 0.2
603,565 - -0.3
603,697 - -0.2
603,752 + -1.4
604,074 + 0.1
604,101 - -1.3
604,351 + 9554 mRNA_1186 0.15 -0.4
604,465 - 9554 mRNA_1186 0.18 -2.1
605,013 + 9554 mRNA_1186 0.35 -2.1
606,354 + 9554 mRNA_1186 0.75 0.6
606,486 + 9554 mRNA_1186 0.79 0.5
606,496 - 9554 mRNA_1186 0.80 1.6
606,550 + 9554 mRNA_1186 0.81 0.3
607,222 - -2.2
607,251 - -0.2
607,398 + -0.5