Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1180

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1179: 9547 - K12611 DCP1B mRNA-decapping enzyme 1B, at 584015 to 586277 9547 mRNA_1180: 9548 - Hypothetical Protein, at 587058 to 592378 9548 mRNA_1181: 9549 - Hypothetical Protein, at 592662 to 593327 9549

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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586,158 - 3.0
586,314 + -1.1
586,447 - 1.1
586,560 - 1.5
586,715 - -0.9
586,741 + 1.6
586,838 + -0.7
586,842 + -0.6
586,899 - 0.9
586,946 - -0.8
587,608 - 9548 mRNA_1180 0.10 1.3
587,927 + 9548 mRNA_1180 0.16 1.3
588,040 - 9548 mRNA_1180 0.18 -3.8
588,045 + 9548 mRNA_1180 0.19 0.0
588,064 - 9548 mRNA_1180 0.19 0.5
588,177 + 9548 mRNA_1180 0.21 0.9
588,319 - 9548 mRNA_1180 0.24 0.6
588,620 + 9548 mRNA_1180 0.29 -3.7
588,868 + 9548 mRNA_1180 0.34 0.1
588,898 + 9548 mRNA_1180 0.35 -1.4
589,038 - 9548 mRNA_1180 0.37 -0.1
589,062 - 9548 mRNA_1180 0.38 -0.4
589,072 + 9548 mRNA_1180 0.38 0.7
589,184 - 9548 mRNA_1180 0.40 -0.3
589,213 + 9548 mRNA_1180 0.40 0.4
589,253 + 9548 mRNA_1180 0.41 -0.5
589,330 - 9548 mRNA_1180 0.43 0.2
589,436 - 9548 mRNA_1180 0.45 1.5
589,468 - 9548 mRNA_1180 0.45 -1.1
589,478 + 9548 mRNA_1180 0.45 1.5
589,613 + 9548 mRNA_1180 0.48 -0.5
589,766 - 9548 mRNA_1180 0.51 2.3
589,805 + 9548 mRNA_1180 0.52 -0.7
589,805 + 9548 mRNA_1180 0.52 0.5
589,903 - 9548 mRNA_1180 0.53 0.5
589,910 + 9548 mRNA_1180 0.54 1.8
590,080 + 9548 mRNA_1180 0.57 0.9
590,299 - 9548 mRNA_1180 0.61 1.0
590,349 - 9548 mRNA_1180 0.62 -0.1
590,668 + 9548 mRNA_1180 0.68 2.0
590,805 - 9548 mRNA_1180 0.70 0.9
591,012 + 9548 mRNA_1180 0.74 0.8
591,201 + 9548 mRNA_1180 0.78 -1.0
591,661 - 9548 mRNA_1180 0.87 -1.2
591,715 - 9548 mRNA_1180 0.88 0.8
591,791 + 9548 mRNA_1180 0.89 -0.7
591,922 - 1.0
591,923 + 0.3
591,934 - 1.0
592,120 + 0.6
592,121 + 0.4
592,124 - 0.1
592,209 + -1.3
592,228 + 0.6
592,284 + -0.0
592,287 - 0.9
592,289 + -0.1
592,653 + -1.4
592,702 - 2.0
592,835 - 9549 mRNA_1181 0.26 -0.3
593,119 - 9549 mRNA_1181 0.69 -0.8
593,361 + -0.5