Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1170

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1169: 9537 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 563547 to 566148 9537 mRNA_1170: 9538 - K09531 DNAJC11 DnaJ homolog subfamily C member 11, at 566177 to 568431 9538 mRNA_1171: 9539 - K07277 SAM50, TOB55, bamA outer membrane protein insertion porin family, at 568552 to 570961 9539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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565,447 - 9537 mRNA_1169 0.73 1.9
565,545 - 9537 mRNA_1169 0.77 0.2
565,559 + 9537 mRNA_1169 0.77 0.4
565,585 - 9537 mRNA_1169 0.78 -0.1
565,744 - 9537 mRNA_1169 0.84 0.1
565,748 - 9537 mRNA_1169 0.85 2.8
565,859 - 9537 mRNA_1169 0.89 -0.6
565,946 + -1.5
565,979 + 0.5
566,199 + 0.7
566,238 - 0.5
566,256 - 0.5
566,490 + 9538 mRNA_1170 0.14 -0.7
566,574 + 9538 mRNA_1170 0.18 -0.3
566,936 + 9538 mRNA_1170 0.34 -1.1
567,272 + 9538 mRNA_1170 0.49 1.1
567,331 - 9538 mRNA_1170 0.51 -0.5
567,487 + 9538 mRNA_1170 0.58 -2.1
567,532 + 9538 mRNA_1170 0.60 0.2
567,799 - 9538 mRNA_1170 0.72 0.8
568,245 - 0.0
568,253 + 0.1
568,298 + 1.0
568,565 + 0.5