Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1169

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1168: 9536 - K01474 hyuB N-methylhydantoinase B, at 560884 to 563023 9536 mRNA_1169: 9537 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 563547 to 566148 9537 mRNA_1170: 9538 - K09531 DNAJC11 DnaJ homolog subfamily C member 11, at 566177 to 568431 9538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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562,866 + -3.0
563,010 - -0.6
563,014 - -0.8
563,096 - 0.0
563,177 - 1.3
563,177 + -0.7
563,177 + -1.5
563,218 + -1.0
563,341 - -1.0
563,351 + 3.8
563,352 + -2.5
563,401 - 0.4
563,404 - 0.4
563,429 - 0.3
563,456 - 0.0
563,678 - -0.2
563,683 + -0.2
563,829 + 9537 mRNA_1169 0.11 0.3
564,106 - 9537 mRNA_1169 0.21 0.8
564,150 + 9537 mRNA_1169 0.23 0.4
564,178 - 9537 mRNA_1169 0.24 0.6
564,287 + 9537 mRNA_1169 0.28 0.6
564,317 + 9537 mRNA_1169 0.30 -1.8
565,000 - 9537 mRNA_1169 0.56 0.0
565,014 + 9537 mRNA_1169 0.56 0.5
565,022 - 9537 mRNA_1169 0.57 1.1
565,447 - 9537 mRNA_1169 0.73 1.9
565,545 - 9537 mRNA_1169 0.77 0.2
565,559 + 9537 mRNA_1169 0.77 0.4
565,585 - 9537 mRNA_1169 0.78 -0.1
565,744 - 9537 mRNA_1169 0.84 0.1
565,748 - 9537 mRNA_1169 0.85 2.8
565,859 - 9537 mRNA_1169 0.89 -0.6
565,946 + -1.5
565,979 + 0.5
566,199 + 0.7
566,238 - 0.5
566,256 - 0.5
566,490 + 9538 mRNA_1170 0.14 -0.7
566,574 + 9538 mRNA_1170 0.18 -0.3
566,936 + 9538 mRNA_1170 0.34 -1.1