Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1166

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1165: 9533 - HMMPfam-Protein of unknown function (DUF1445)-PF07286,PIRSF--PIRSF029755,SUPERFAMILY--SSF160920, at 553391 to 554372 9533 mRNA_1166: 9534 - KOG2533 Permease of the major facilitator superfamily, at 554788 to 557060 9534 mRNA_1167: 9535 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 557587 to 560660 9535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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554,014 - 9533 mRNA_1165 0.63 -0.9
554,023 - 9533 mRNA_1165 0.64 0.9
554,278 - 0.3
554,286 + 1.0
554,351 + -0.1
554,544 + 0.1
554,563 - 0.2
554,625 - -0.9
554,710 - -0.6
555,124 + 9534 mRNA_1166 0.15 0.7
555,178 + 9534 mRNA_1166 0.17 -0.1
555,341 + 9534 mRNA_1166 0.24 0.1
555,344 - 9534 mRNA_1166 0.24 -1.4
555,770 - 9534 mRNA_1166 0.43 1.5
555,872 - 9534 mRNA_1166 0.48 0.2
555,913 - 9534 mRNA_1166 0.49 0.4
555,917 - 9534 mRNA_1166 0.50 0.3
555,929 + 9534 mRNA_1166 0.50 -1.6
556,084 + 9534 mRNA_1166 0.57 -0.0
556,348 + 9534 mRNA_1166 0.69 -1.6
556,355 + 9534 mRNA_1166 0.69 0.6
556,380 - 9534 mRNA_1166 0.70 -0.1
556,488 + 9534 mRNA_1166 0.75 0.6
556,550 - 9534 mRNA_1166 0.78 1.9
556,662 + 9534 mRNA_1166 0.82 0.4
556,761 - 9534 mRNA_1166 0.87 -0.4
556,788 - 9534 mRNA_1166 0.88 1.0
556,803 + 9534 mRNA_1166 0.89 -0.9
556,807 + 9534 mRNA_1166 0.89 0.6
556,931 - 0.6
557,108 + -0.9
557,148 - 0.2
557,295 - -0.0
557,371 + -1.8
557,384 + 0.9
557,390 - 0.8
557,396 - 0.6
557,405 + 0.3
557,405 + -0.2
557,508 - 0.8
557,508 - -1.1
557,519 - -0.2
557,536 - -0.0
557,549 + -0.5
557,570 - 0.8
557,578 - 0.9
557,590 - -1.3
557,686 + 0.2
557,692 - -1.7
557,762 + -0.2
558,015 + 9535 mRNA_1167 0.14 -1.1