Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1163

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1162: 9530 - SUPERFAMILY--SSF52047, at 547799 to 548923 9530 mRNA_1163: 9531 - KOG1378 Purple acid phosphatase, at 549366 to 551873 9531 mRNA_1164: 9532 - Hypothetical Protein, at 552710 to 552960 9532

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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548,640 - 9530 mRNA_1162 0.75 -0.2
548,649 + 9530 mRNA_1162 0.76 -1.1
548,931 + 0.9
548,953 - 1.3
548,960 + 0.2
548,977 + -1.3
549,107 - -1.3
549,116 - 0.7
549,130 + -0.4
549,132 + -0.5
549,245 + -1.0
549,273 + 0.1
549,276 - -0.5
549,295 + 0.6
549,445 + -0.7
549,548 + -0.2
549,581 - -1.0
549,737 + 9531 mRNA_1163 0.15 -0.2
549,737 + 9531 mRNA_1163 0.15 1.9
549,855 + 9531 mRNA_1163 0.19 1.4
550,058 + 9531 mRNA_1163 0.28 0.3
550,306 - 9531 mRNA_1163 0.37 0.9
550,322 - 9531 mRNA_1163 0.38 0.8
550,331 - 9531 mRNA_1163 0.38 -0.8
550,467 + 9531 mRNA_1163 0.44 -1.0
550,472 + 9531 mRNA_1163 0.44 -0.6
550,776 + 9531 mRNA_1163 0.56 -0.0
551,075 - 9531 mRNA_1163 0.68 -2.6
551,354 - 9531 mRNA_1163 0.79 -1.5
551,802 - 1.7
551,900 - -0.1
552,323 + 0.5
552,338 - 0.3
552,354 + 0.5
552,650 + -0.9
552,697 - -0.5
552,701 + -1.1
552,761 + 9532 mRNA_1164 0.20 -0.2
552,777 - 9532 mRNA_1164 0.27 1.0
552,788 - 9532 mRNA_1164 0.31 3.4
552,789 - 9532 mRNA_1164 0.31 1.2
552,824 + 9532 mRNA_1164 0.45 -0.0
552,848 - 9532 mRNA_1164 0.55 1.2
552,853 + 9532 mRNA_1164 0.57 2.5