Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1160

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1159: 9527 - HMMPfam-Archaeal ATPase-PF01637,SUPERFAMILY--SSF52540, at 538557 to 540883 9527 mRNA_1160: 9528 - KOG4159 Predicted E3 ubiquitin ligase, at 540916 to 543538 9528 mRNA_1161: 9529 - K03028 PSMD2, RPN1 26S proteasome regulatory subunit N1, at 543983 to 547395 9529

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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539,930 - 9527 mRNA_1159 0.59 -1.3
539,988 + 9527 mRNA_1159 0.61 -2.3
540,016 - 9527 mRNA_1159 0.63 0.7
540,047 - 9527 mRNA_1159 0.64 -2.7
540,091 - 9527 mRNA_1159 0.66 -0.5
540,239 - 9527 mRNA_1159 0.72 0.4
540,278 + 9527 mRNA_1159 0.74 0.2
540,284 - 9527 mRNA_1159 0.74 0.0
540,366 + 9527 mRNA_1159 0.78 0.2
540,401 - 9527 mRNA_1159 0.79 1.5
540,471 - 9527 mRNA_1159 0.82 0.4
540,562 + 9527 mRNA_1159 0.86 0.3
540,650 - 9527 mRNA_1159 0.90 0.9
540,777 + -3.3
540,849 + -1.6
540,937 - 1.0
542,483 - 9528 mRNA_1160 0.60 0.5
542,544 + 9528 mRNA_1160 0.62 0.8
542,984 + 9528 mRNA_1160 0.79 -1.6
543,198 + 9528 mRNA_1160 0.87 -1.3
543,806 + 0.4
543,829 + -2.0
543,830 - -1.0
543,836 - -1.1
543,844 - 1.1
543,845 + 1.4
543,958 - 3.9
543,978 + 3.3