Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1147

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1146: 9514 - K06682 TEM1 Gtp-binding protein of the ras superfamily involved in termination of M-phase, at 514392 to 515549 9514 mRNA_1147: 9515 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 515844 to 517256 9515 mRNA_1148: 9516 - K02923 RP-L38e, RPL38 large subunit ribosomal protein L38e, at 517716 to 518527 9516

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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514,858 - 9514 mRNA_1146 0.40 -0.9
514,859 + 9514 mRNA_1146 0.40 -0.4
514,864 - 9514 mRNA_1146 0.41 -0.4
514,874 - 9514 mRNA_1146 0.42 0.2
514,895 - 9514 mRNA_1146 0.43 -2.1
515,117 - 9514 mRNA_1146 0.63 3.0
515,125 - 9514 mRNA_1146 0.63 -0.1
515,281 - 9514 mRNA_1146 0.77 1.2
515,724 + 0.9
515,876 + 0.2
515,992 - 9515 mRNA_1147 0.10 0.7
516,438 + 9515 mRNA_1147 0.42 0.3
516,461 + 9515 mRNA_1147 0.44 0.7
516,461 - 9515 mRNA_1147 0.44 0.1
516,463 + 9515 mRNA_1147 0.44 -1.5
516,627 + 9515 mRNA_1147 0.55 -1.5
516,773 + 9515 mRNA_1147 0.66 -2.0
516,892 + 9515 mRNA_1147 0.74 -0.2
517,174 + 1.2
517,181 - 1.7
517,341 + -0.6
517,348 + 0.8
517,360 - -0.0
517,365 + 1.2
517,619 - 2.0
517,623 - 0.5
517,631 - -0.5
517,637 - 0.0
517,637 + 0.3
517,651 + 0.3
517,652 - -0.5
517,660 - 1.5
517,670 + -0.3