Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1133

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1132: 9500 - K20362 YIF1 protein transport protein YIF1, at 483022 to 484511 9500 mRNA_1133: 9501 - Hypothetical Protein, at 485139 to 486293 9501 mRNA_1134: 9502 - K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B, at 486647 to 489747 9502

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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484,364 + 0.8
484,420 + -0.7
484,692 + -0.2
484,697 + -2.0
484,704 + -0.8
484,713 + -1.2
484,714 + -1.6
484,725 + -2.1
484,732 + 0.0
484,966 + -0.5
485,017 - 0.4
485,032 - 0.6
485,168 + 0.9
485,418 + 9501 mRNA_1133 0.24 -0.1
485,420 - 9501 mRNA_1133 0.24 -0.2
485,432 - 9501 mRNA_1133 0.25 -1.9
485,474 + 9501 mRNA_1133 0.29 -0.1
485,618 + 9501 mRNA_1133 0.41 2.7
485,705 - 9501 mRNA_1133 0.49 -1.1
485,774 + 9501 mRNA_1133 0.55 0.2
485,789 - 9501 mRNA_1133 0.56 -1.7
485,839 + 9501 mRNA_1133 0.61 -0.2
485,849 + 9501 mRNA_1133 0.61 -1.7
485,927 - 9501 mRNA_1133 0.68 -0.2
486,036 - 9501 mRNA_1133 0.78 0.7
486,098 - 9501 mRNA_1133 0.83 -2.5
486,313 + 0.1
486,328 + 0.7
486,361 + 0.6
486,484 - -2.4
486,747 - -1.1
487,099 - 9502 mRNA_1134 0.15 0.5