Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1123

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1122: 9490 - BLAST glycoside hydrolase family 28 protein [Tulasnella cal..., at 453460 to 456260 9490 mRNA_1123: 9491 - K00078 DHDH dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP), at 456532 to 457918 9491 mRNA_1124: 9492 - K09613 COPS5, CSN5 COP9 signalosome complex subunit 5, at 458374 to 459990 9492

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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455,629 + 9490 mRNA_1122 0.77 0.3
455,726 - 9490 mRNA_1122 0.81 0.1
455,751 + 9490 mRNA_1122 0.82 2.7
456,001 + 1.8
456,020 - 0.5
456,149 + -0.7
456,214 - 1.3
456,545 - 0.3
456,625 - -0.2
456,781 - 9491 mRNA_1123 0.18 0.3
456,866 + 9491 mRNA_1123 0.24 -0.5
456,899 + 9491 mRNA_1123 0.26 0.1
457,469 - 9491 mRNA_1123 0.68 1.1
457,602 + 9491 mRNA_1123 0.77 -2.2
457,609 - 9491 mRNA_1123 0.78 0.1
457,622 - 9491 mRNA_1123 0.79 -0.7
457,910 - 0.1
457,916 + -1.6
457,917 + -1.1
458,059 - 1.5
458,075 - -2.5
458,080 + -1.3
458,088 + 0.7
458,095 - -1.8
458,103 - 1.4
458,112 + 0.3
458,200 + 0.5
458,220 - 0.1
458,223 + 0.3
458,229 + 0.2
458,229 + 0.6
458,375 + -0.1
458,376 + 1.5
458,409 - -1.2
458,654 + 9492 mRNA_1124 0.17 -0.3
458,798 + 9492 mRNA_1124 0.26 0.4