Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1119

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1118: 9486 - HMMPfam-RTA1 like protein-PF04479, at 445419 to 446946 9486 mRNA_1119: 9487 - Hypothetical Protein, at 447624 to 448229 9487 mRNA_1120: 9488 - KOG1612 Exosomal 3'-5' exoribonuclease complex, subunit Rrp42, at 448801 to 450033 9488

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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446,640 + 9486 mRNA_1118 0.80 -1.3
446,653 + 9486 mRNA_1118 0.81 -1.7
446,805 - 0.5
446,859 - -1.0
446,875 + 0.7
446,876 - -1.0
446,903 + 0.4
446,921 + 1.0
446,922 + -0.3
446,941 - -1.5
447,029 + 0.3
447,044 + 0.2
447,084 - 0.0
447,090 - 0.8
447,116 - 1.0
447,117 + 1.0
447,134 - 1.7
447,150 + 0.8
447,167 - -1.5
447,196 - -0.0
447,198 - -0.4
447,200 + -1.0
447,204 - -0.5
447,214 + -0.0
447,232 + -1.0
447,237 - 3.1
447,237 - 0.7
447,237 - 0.6
447,238 - -0.7
447,238 - 0.4
447,240 + -1.2
447,242 - -1.3
447,242 - -2.0
447,242 + -0.8
447,242 - 0.5
447,244 - -0.4
447,255 - 0.8
447,270 + 0.5
447,270 + 0.8
447,273 + -0.0
447,280 - -2.5
447,282 + -2.1
447,286 - 0.6
447,289 - 0.4
447,306 - 1.9
447,307 - -0.8
447,321 + -0.7
447,321 + 0.6
447,321 + -2.4
447,322 - -0.7
447,328 - 0.5
447,345 + 0.1
447,421 + 0.6
447,424 + 0.2
447,437 - -2.1
447,447 + -0.1
447,578 - 1.6
447,580 + 0.6
447,608 + 1.2
447,715 + 9487 mRNA_1119 0.15 -1.1
447,835 + 9487 mRNA_1119 0.35 0.7
447,872 + 9487 mRNA_1119 0.41 -1.2
447,914 + 9487 mRNA_1119 0.48 -0.8
448,007 + 9487 mRNA_1119 0.63 -0.8
448,011 + 9487 mRNA_1119 0.64 -0.2
448,039 - 9487 mRNA_1119 0.68 0.1
448,184 + -0.1
448,312 + -0.3
448,336 - -0.1
448,473 - 1.3
448,581 + -0.1
448,625 + 1.2
448,762 - 0.2