Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1111

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1110: 9478 - Hypothetical Protein, at 428517 to 429913 9478 mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430146 to 432940 9479 mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433263 to 434310 9480

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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429,176 + 9478 mRNA_1110 0.47 -1.1
429,351 + 9478 mRNA_1110 0.60 1.3
429,527 - 9478 mRNA_1110 0.72 1.8
429,737 - 9478 mRNA_1110 0.87 -1.4
429,758 - 9478 mRNA_1110 0.89 -2.4
429,919 + -2.8
429,920 - -0.9
430,032 - 1.9
430,035 - 1.1
430,038 + -1.3
430,047 + -0.1
430,047 + 0.6
430,054 + -0.7
430,074 - 2.2
430,226 + -0.7
430,229 - -0.1
430,229 - -0.7
430,344 - -0.1
430,348 - 1.3
430,350 - 0.3
430,351 + -0.3
430,467 - 9479 mRNA_1111 0.11 -0.4
430,485 - 9479 mRNA_1111 0.12 1.9
430,498 + 9479 mRNA_1111 0.13 1.1
430,614 + 9479 mRNA_1111 0.17 -0.1
430,655 + 9479 mRNA_1111 0.18 0.4
430,670 - 9479 mRNA_1111 0.19 0.8
430,730 + 9479 mRNA_1111 0.21 -0.2
430,812 + 9479 mRNA_1111 0.24 -2.2
430,930 - 9479 mRNA_1111 0.28 0.4
430,932 - 9479 mRNA_1111 0.28 0.1
431,643 - 9479 mRNA_1111 0.54 -0.7
431,802 + 9479 mRNA_1111 0.59 -0.5
431,954 - 9479 mRNA_1111 0.65 -0.3
432,231 + 9479 mRNA_1111 0.75 0.1
432,353 + 9479 mRNA_1111 0.79 -2.4
432,636 - 9479 mRNA_1111 0.89 -0.3
432,689 - 0.3
432,794 + -1.5
432,813 + 0.7
432,948 + 0.6
433,092 - -0.2
433,096 - -0.0
433,252 - -0.1
433,267 + -0.5
433,267 - -1.1
433,381 - 9480 mRNA_1112 0.11 -0.4
433,388 - 9480 mRNA_1112 0.12 0.7
433,399 + 9480 mRNA_1112 0.13 0.9
433,401 + 9480 mRNA_1112 0.13 1.1
433,406 + 9480 mRNA_1112 0.14 1.4
433,413 + 9480 mRNA_1112 0.14 -0.1
433,492 - 9480 mRNA_1112 0.22 2.8
433,537 + 9480 mRNA_1112 0.26 1.0
433,541 - 9480 mRNA_1112 0.27 0.0
433,687 + 9480 mRNA_1112 0.40 0.5
433,688 - 9480 mRNA_1112 0.41 -1.1
433,697 + 9480 mRNA_1112 0.41 -0.5
433,705 - 9480 mRNA_1112 0.42 0.9