Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1088

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1087: 9455 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 377970 to 379646 9455 mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380129 to 381362 9456 mRNA_1089: 9457 - K01638 aceB, glcB malate synthase, at 381522 to 383960 9457

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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379,147 + 9455 mRNA_1087 0.70 0.3
379,155 + 9455 mRNA_1087 0.71 -0.4
379,270 - 9455 mRNA_1087 0.78 0.9
379,737 - 1.4
379,832 + 1.2
379,861 - 0.1
379,865 + -1.8
379,870 - -0.4
379,870 - 1.2
379,995 - -1.3
380,022 + -0.5
380,036 + 0.7
380,044 - -0.2
380,054 + 0.7
380,089 + -3.0
380,174 - -0.6
380,177 + -1.5
380,346 + 9456 mRNA_1088 0.18 -0.9
380,629 - 9456 mRNA_1088 0.41 0.7
381,055 - 9456 mRNA_1088 0.75 0.1
381,182 - 9456 mRNA_1088 0.85 0.7
381,231 + 9456 mRNA_1088 0.89 -0.6
381,239 + 2.6
381,338 + -1.9
381,342 - -0.4
381,356 + 0.6
381,373 + -3.8
381,427 + 0.4
381,448 + -0.5
381,458 + 0.3
381,472 - -0.1
381,597 - 0.6
381,619 + 1.7
381,621 + 1.5
381,642 + -0.8
381,652 + -0.5
381,749 + -0.5
381,763 + 1.8
381,861 - 9457 mRNA_1089 0.14 0.5
381,921 - 9457 mRNA_1089 0.16 -0.1
382,196 + 9457 mRNA_1089 0.28 0.5
382,202 + 9457 mRNA_1089 0.28 -1.1