Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1087

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1086: 9454 - Hypothetical Protein, at 374386 to 377567 9454 mRNA_1087: 9455 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 377970 to 379646 9455 mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380129 to 381362 9456

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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377,013 - 9454 mRNA_1086 0.83 -1.2
377,065 + 9454 mRNA_1086 0.84 -1.1
377,086 - 9454 mRNA_1086 0.85 0.1
377,194 + 9454 mRNA_1086 0.88 -0.8
377,214 - 9454 mRNA_1086 0.89 -1.9
377,343 - -0.9
377,487 - -0.2
377,826 - 1.9
377,839 + -1.6
377,861 - -1.1
377,978 - -0.2
378,230 - 9455 mRNA_1087 0.16 -0.7
378,570 + 9455 mRNA_1087 0.36 -0.0
378,850 - 9455 mRNA_1087 0.52 -1.2
378,993 - 9455 mRNA_1087 0.61 1.0
379,147 + 9455 mRNA_1087 0.70 0.3
379,155 + 9455 mRNA_1087 0.71 -0.4
379,270 - 9455 mRNA_1087 0.78 0.9
379,737 - 1.4
379,832 + 1.2
379,861 - 0.1
379,865 + -1.8
379,870 - -0.4
379,870 - 1.2
379,995 - -1.3
380,022 + -0.5
380,036 + 0.7
380,044 - -0.2
380,054 + 0.7
380,089 + -3.0
380,174 - -0.6
380,177 + -1.5
380,346 + 9456 mRNA_1088 0.18 -0.9
380,629 - 9456 mRNA_1088 0.41 0.7