Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1071

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1070: 9438 - K20792 NAA15_16 N-alpha-acetyltransferase 15/16, NatA auxiliary subunit, at 333722 to 337577 9438 mRNA_1071: 9439 - K18757 LARP1 la-related protein 1, at 337866 to 340861 9439 mRNA_1072: 9440 - Hypothetical Protein, at 341677 to 343060 9440

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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337,283 - -2.4
337,688 - -2.5
337,844 + -0.4
337,941 - -1.3
338,172 + 9439 mRNA_1071 0.10 -1.3
338,460 + 9439 mRNA_1071 0.20 0.1
338,509 - 9439 mRNA_1071 0.21 1.5
338,872 + 9439 mRNA_1071 0.34 0.7
339,251 - 9439 mRNA_1071 0.46 -0.3
339,330 + 9439 mRNA_1071 0.49 -0.6
339,330 + 9439 mRNA_1071 0.49 2.8
339,612 - 9439 mRNA_1071 0.58 -0.5
339,647 - 9439 mRNA_1071 0.59 0.6
340,179 + 9439 mRNA_1071 0.77 2.4
340,263 - 9439 mRNA_1071 0.80 0.8
341,075 + 0.6
341,085 + 1.2
341,105 + -0.7
341,343 - 0.4
341,375 - -1.6
341,665 - -0.0