Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1062

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1061: 9429 - BLAST heat shock 70 kDa protein 12A [Rhizoctonia solani AG-..., at 308503 to 311284 9429 mRNA_1062: 9430 - K10742 DNA2 DNA replication ATP-dependent helicase Dna2, at 311379 to 314968 9430 mRNA_1063: 9431 - BLAST DNA replication ATP-dependent helicase Dna2 [Rhod..., at 315591 to 316093 9431

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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310,578 - 9429 mRNA_1061 0.75 -1.5
310,646 - 9429 mRNA_1061 0.77 -0.7
310,646 - 9429 mRNA_1061 0.77 -3.8
310,665 + 9429 mRNA_1061 0.78 0.6
310,707 - 9429 mRNA_1061 0.79 -1.6
310,752 - 9429 mRNA_1061 0.81 -1.9
310,755 - 9429 mRNA_1061 0.81 0.2
310,758 + 9429 mRNA_1061 0.81 0.6
310,767 + 9429 mRNA_1061 0.81 -0.1
310,971 + 9429 mRNA_1061 0.89 -0.9
311,062 + 0.1
311,217 + 0.0
311,349 + 1.5
311,349 - -1.3
311,372 + -1.1
311,393 + -0.8
311,905 - 9430 mRNA_1062 0.15 1.0
312,482 + 9430 mRNA_1062 0.31 0.3
312,536 + 9430 mRNA_1062 0.32 -2.2
312,913 + 9430 mRNA_1062 0.43 0.1
312,918 - 9430 mRNA_1062 0.43 -0.4
312,979 - 9430 mRNA_1062 0.45 -1.8
313,090 + 9430 mRNA_1062 0.48 1.2
313,134 + 9430 mRNA_1062 0.49 1.4
313,215 - 9430 mRNA_1062 0.51 -1.7
313,227 - 9430 mRNA_1062 0.51 -2.9
313,238 - 9430 mRNA_1062 0.52 -0.3
313,315 + 9430 mRNA_1062 0.54 0.2
313,420 + 9430 mRNA_1062 0.57 1.5
313,459 + 9430 mRNA_1062 0.58 -0.2
313,471 + 9430 mRNA_1062 0.58 -0.4
313,497 + 9430 mRNA_1062 0.59 -2.9
313,510 + 9430 mRNA_1062 0.59 -0.7
313,692 + 9430 mRNA_1062 0.64 -0.4
313,960 - 9430 mRNA_1062 0.72 -0.4
314,187 - 9430 mRNA_1062 0.78 0.1
314,568 + 9430 mRNA_1062 0.89 -0.7
314,610 + 0.5
314,611 - 1.3
314,716 + 0.6
314,833 + -2.3
314,883 - 0.9
314,890 + 0.3
315,026 + 0.9
315,036 + 1.2
315,120 + -0.0
315,148 + 2.0
315,255 - 1.3
315,290 - 1.9
315,416 + -3.0
315,448 + -2.9
315,557 + 0.5
315,702 - 9431 mRNA_1063 0.22 1.0
315,705 + 9431 mRNA_1063 0.23 -1.3
315,855 - 9431 mRNA_1063 0.52 -0.8
315,881 + 9431 mRNA_1063 0.58 0.3