Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1041

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1040: 9408 - HMMPfam-NADH(P)-binding-PF13460,SUPERFAMILY--SSF51735, at 259080 to 260427 9408 mRNA_1041: 9409 - K08504 BET1 blocked early in transport 1, at 260898 to 261462 9409 mRNA_1042: 9410 - Hypothetical Protein, at 261583 to 262732 9410

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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260,146 - 9408 mRNA_1040 0.79 -0.0
260,172 + 9408 mRNA_1040 0.81 -1.4
260,185 + 9408 mRNA_1040 0.82 0.9
260,276 - 9408 mRNA_1040 0.89 2.6
260,310 + 1.8
260,396 - -0.3
260,456 + 0.1
260,615 + 1.1
260,624 - -0.1
260,635 + -2.3
260,643 + 2.1
260,746 - 0.2
260,901 + 2.7
260,932 + 0.2
261,064 - 9409 mRNA_1041 0.29 1.4
261,085 - 9409 mRNA_1041 0.33 -0.4
261,087 + 9409 mRNA_1041 0.33 -0.9
261,194 - 9409 mRNA_1041 0.52 2.0
261,210 - 9409 mRNA_1041 0.55 -0.4
261,349 - 9409 mRNA_1041 0.80 0.4
261,350 + 9409 mRNA_1041 0.80 0.4
261,355 + 9409 mRNA_1041 0.81 0.6
261,373 + 9409 mRNA_1041 0.84 0.0
261,506 - 0.5
261,554 - -1.2
261,655 + 0.1
261,820 - 9410 mRNA_1042 0.21 2.4
261,888 + 9410 mRNA_1042 0.27 0.1
261,911 + 9410 mRNA_1042 0.29 0.7
261,932 + 9410 mRNA_1042 0.30 -0.7
261,932 - 9410 mRNA_1042 0.30 -0.6
262,106 - 9410 mRNA_1042 0.45 -0.6
262,110 + 9410 mRNA_1042 0.46 0.9
262,255 - 9410 mRNA_1042 0.58 -1.5
262,414 - 9410 mRNA_1042 0.72 1.9
262,419 - 9410 mRNA_1042 0.73 -0.7
262,421 + 9410 mRNA_1042 0.73 -0.5
262,427 - 9410 mRNA_1042 0.73 -0.8