Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1014

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1013: 9381 - K11761 NPL6, RSC7 chromatin structure-remodeling complex protein RSC7, at 207547 to 209466 9381 mRNA_1014: 9382 - Hypothetical Protein, at 209891 to 213073 9382 mRNA_1015: 9383 - HMMPfam-Thioesterase superfamily-PF03061,SUPERFAMILY--SSF54637, at 213676 to 214574 9383

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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209,641 - 0.1
209,643 + 1.0
209,653 + -3.2
209,772 - 0.7
209,798 + -1.2
209,956 + 1.0
209,995 + -0.3
209,998 - -0.0
210,059 + 1.6
210,099 - -2.0
210,109 + 0.1
210,245 - 9382 mRNA_1014 0.11 0.2
210,283 + 9382 mRNA_1014 0.12 2.3
210,380 + 9382 mRNA_1014 0.15 0.7
210,647 + 9382 mRNA_1014 0.24 -0.9
210,678 + 9382 mRNA_1014 0.25 0.3
210,801 + 9382 mRNA_1014 0.29 0.5
210,864 + 9382 mRNA_1014 0.31 0.4
210,962 + 9382 mRNA_1014 0.34 -0.9
211,135 + 9382 mRNA_1014 0.39 -0.0
211,149 + 9382 mRNA_1014 0.40 -1.3
211,177 + 9382 mRNA_1014 0.40 0.3
211,446 + 9382 mRNA_1014 0.49 -1.5
211,597 - 9382 mRNA_1014 0.54 -1.2
211,706 + 9382 mRNA_1014 0.57 0.5
211,872 + 9382 mRNA_1014 0.62 0.1
212,151 + 9382 mRNA_1014 0.71 -2.1
212,154 + 9382 mRNA_1014 0.71 0.3
212,163 - 9382 mRNA_1014 0.71 -2.3
212,164 + 9382 mRNA_1014 0.71 2.4
212,165 + 9382 mRNA_1014 0.71 0.0
212,200 - 9382 mRNA_1014 0.73 0.6
212,276 - 9382 mRNA_1014 0.75 -1.4
212,454 + 9382 mRNA_1014 0.81 0.2
212,540 + 9382 mRNA_1014 0.83 -2.4
212,604 - 9382 mRNA_1014 0.85 0.8
212,679 + 9382 mRNA_1014 0.88 0.5
212,692 - 9382 mRNA_1014 0.88 1.9
212,828 - 1.4
212,862 - 0.7
212,956 - -0.4
213,311 - 1.1
213,319 - -1.0
213,455 - -1.5
213,506 + -0.5
213,553 - 0.4
213,553 - 0.4
213,573 + 2.3
213,980 - 9383 mRNA_1015 0.34 -1.6