Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1000

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_999: 9367 - HMMPfam-PAPA-1-like conserved region-PF04795, at 169197 to 171213 9367 mRNA_1000: 9368 - BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ..., at 171507 to 175243 9368 mRNA_1001: 9369 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 175417 to 177383 9369

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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170,552 - 9367 mRNA_999 0.67 0.2
170,697 + 9367 mRNA_999 0.74 2.1
170,712 + 9367 mRNA_999 0.75 0.8
170,853 + 9367 mRNA_999 0.82 -1.8
171,016 - -1.0
171,064 - 0.5
171,071 - -3.8
171,114 - 0.0
171,140 + -1.3
171,170 + -0.3
171,274 + -1.2
171,285 + 2.4
171,414 - -0.7
171,424 - -0.5
171,558 - 0.3
171,568 + -1.6
171,569 - -0.8
172,063 + 9368 mRNA_1000 0.15 -2.0
172,413 + 9368 mRNA_1000 0.24 0.5
172,467 + 9368 mRNA_1000 0.26 0.4
172,867 + 9368 mRNA_1000 0.36 1.9
172,877 + 9368 mRNA_1000 0.37 0.3
173,224 + 9368 mRNA_1000 0.46 0.5
173,647 - 9368 mRNA_1000 0.57 0.1
173,834 - 9368 mRNA_1000 0.62 -0.4
174,236 - 9368 mRNA_1000 0.73 2.1
174,279 - 9368 mRNA_1000 0.74 0.9
174,840 - 9368 mRNA_1000 0.89 -0.2
174,847 + 9368 mRNA_1000 0.89 -1.0
174,873 - 1.6
174,880 + 2.0
174,981 - -0.0
175,107 - 1.0
175,644 + 9369 mRNA_1001 0.12 0.9
175,675 - 9369 mRNA_1001 0.13 -2.0
175,697 - 9369 mRNA_1001 0.14 -0.5
175,794 + 9369 mRNA_1001 0.19 0.1
176,105 - 9369 mRNA_1001 0.35 0.6
176,143 + 9369 mRNA_1001 0.37 -0.8