Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_997

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_996: 9364 - K19791 FET3_5 iron transport multicopper oxidase, at 160516 to 163771 9364 mRNA_997: 9365 - K08735 MSH2 DNA mismatch repair protein MSH2, at 164007 to 168056 9365 mRNA_998: 9366 - Hypothetical Protein, at 168302 to 169013 9366

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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163,109 - 9364 mRNA_996 0.80 1.1
163,518 + -1.8
163,523 - 0.7
163,813 - -0.5
163,832 - 0.6
163,832 + -1.9
163,836 - 1.6
163,837 + 0.4
163,837 + -0.9
163,839 - -0.3
163,849 + -0.5
163,863 - -2.3
163,863 + -0.3
163,877 - -0.8
163,877 - 2.2
163,880 + -3.8
163,880 - -1.1
163,889 + 2.7
163,892 - -1.1
163,903 + 0.3
163,922 - 0.5
163,926 + 0.5
163,933 - -0.1
163,959 + 1.5
163,976 + -1.1
163,977 + 0.3
163,982 + -0.5
163,994 - -1.7
164,024 + -0.4
164,024 + -0.6
164,030 + -1.4
164,144 + -0.5
164,161 + -0.0
164,298 - -0.7
164,302 + -1.0
164,306 + 1.8
164,316 + -0.6
164,456 - 9365 mRNA_997 0.11 -0.6
164,606 - 9365 mRNA_997 0.15 1.2
164,846 + 9365 mRNA_997 0.21 -1.1
165,159 + 9365 mRNA_997 0.28 1.0
165,167 - 9365 mRNA_997 0.29 1.8
165,183 - 9365 mRNA_997 0.29 -0.1
165,325 + 9365 mRNA_997 0.33 1.7
165,339 + 9365 mRNA_997 0.33 -1.3
165,341 - 9365 mRNA_997 0.33 -1.8
165,349 + 9365 mRNA_997 0.33 -0.1
165,641 + 9365 mRNA_997 0.40 -0.7
165,731 + 9365 mRNA_997 0.43 -0.2
165,861 + 9365 mRNA_997 0.46 1.4
165,896 - 9365 mRNA_997 0.47 -0.8
165,899 + 9365 mRNA_997 0.47 0.1
166,038 - 9365 mRNA_997 0.50 1.3
166,150 + 9365 mRNA_997 0.53 -1.3
166,311 + 9365 mRNA_997 0.57 2.4
166,461 + 9365 mRNA_997 0.61 -1.2
166,751 - 9365 mRNA_997 0.68 1.1
166,761 - 9365 mRNA_997 0.68 0.8
166,892 + 9365 mRNA_997 0.71 -0.1
167,297 - 9365 mRNA_997 0.81 1.1
167,457 - 9365 mRNA_997 0.85 -1.7
167,457 + 9365 mRNA_997 0.85 0.0
167,633 - 9365 mRNA_997 0.90 0.2
167,749 - 1.8
167,874 - 0.2
167,887 + -2.2
167,909 - -0.9
168,020 + 0.6
168,057 + 0.2
168,072 + -1.4
168,086 + -0.2
168,514 - 9366 mRNA_998 0.30 -1.9
168,644 + 9366 mRNA_998 0.48 -0.2
168,669 - 9366 mRNA_998 0.52 0.4