Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_996

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_995: 9363 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 155513 to 160267 9363 mRNA_996: 9364 - K19791 FET3_5 iron transport multicopper oxidase, at 160516 to 163771 9364 mRNA_997: 9365 - K08735 MSH2 DNA mismatch repair protein MSH2, at 164007 to 168056 9365

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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159,742 - 9363 mRNA_995 0.89 -1.4
159,863 + 0.2
159,909 - 0.2
160,011 - 1.1
160,018 + -1.4
160,152 - 1.2
160,163 - -0.8
160,164 + -0.6
160,170 - 2.2
160,173 - -0.3
160,196 + -0.4
160,210 - -0.9
160,295 + -0.5
160,302 + -0.2
160,305 - -0.5
160,309 - 0.5
160,323 - -0.4
160,347 - 0.6
160,348 + 0.3
160,352 - -0.9
160,483 - 0.3
161,324 - 9364 mRNA_996 0.25 -2.1
163,109 - 9364 mRNA_996 0.80 1.1
163,518 + -1.8
163,523 - 0.7
163,813 - -0.5
163,832 - 0.6
163,832 + -1.9
163,836 - 1.6
163,837 + 0.4
163,837 + -0.9
163,839 - -0.3
163,849 + -0.5
163,863 - -2.3
163,863 + -0.3
163,877 - -0.8
163,877 - 2.2
163,880 + -3.8
163,880 - -1.1
163,889 + 2.7
163,892 - -1.1
163,903 + 0.3
163,922 - 0.5
163,926 + 0.5
163,933 - -0.1
163,959 + 1.5
163,976 + -1.1
163,977 + 0.3
163,982 + -0.5
163,994 - -1.7
164,024 + -0.4
164,024 + -0.6
164,030 + -1.4
164,144 + -0.5
164,161 + -0.0
164,298 - -0.7
164,302 + -1.0
164,306 + 1.8
164,316 + -0.6
164,456 - 9365 mRNA_997 0.11 -0.6
164,606 - 9365 mRNA_997 0.15 1.2