Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_972

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_971: 9339 - KOG2262 Sexual differentiation process protein ISP4, at 104337 to 107412 9339 mRNA_972: 9340 - Hypothetical Protein, at 107840 to 108806 9340 mRNA_973: 9341 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 109023 to 112852 9341

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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106,892 + 9339 mRNA_971 0.83 -2.4
107,017 + 9339 mRNA_971 0.87 -0.5
107,023 - 9339 mRNA_971 0.87 -0.3
107,031 + 9339 mRNA_971 0.88 -0.6
107,040 + 9339 mRNA_971 0.88 1.8
107,122 + 1.6
107,184 - -0.3
107,213 + -0.1
107,218 - 1.0
107,233 + 0.2
107,266 + 0.0
107,327 - 0.2
107,340 - 0.2
107,345 + 0.3
107,352 + -0.3
107,363 - 0.0
107,370 + -2.2
107,430 + 0.0
107,461 - -0.9
107,464 - 0.4
107,471 + 2.1
107,483 - 0.4
107,488 - -0.5
107,490 + -1.6
107,491 - -0.3
107,499 - -0.6
107,499 - -0.9
107,499 - -0.5
107,500 + -0.1
107,508 - 1.4
107,509 + 1.0
107,515 + 0.0
107,515 - 0.1
107,519 - 3.1
107,522 - -0.9
107,523 + 0.8
107,524 + -0.2
107,526 + 0.8
107,535 + -0.6
107,537 + -0.8
107,540 - -0.9
107,548 + -1.4
107,548 - -0.1
107,554 + -1.7
107,559 - 0.7
107,560 + 0.5
107,560 - 1.0
107,567 + 0.1
107,571 - 0.7
107,576 - 0.2
107,577 + 0.2
107,581 - 0.5
107,585 - 0.1
107,585 - -0.3
107,585 + -1.3
107,585 + -1.2
107,586 + 1.6
107,640 + 0.1
107,645 - 1.8
107,653 + -0.5
107,674 - -1.3
107,683 - 0.6
107,687 - 2.5
107,690 - 1.0
107,691 + 1.4
107,693 - -1.7
107,693 - 1.9
107,698 + -0.4
107,700 - 1.8
107,712 + 0.1
107,713 - 1.3
107,714 - 0.2
107,717 - 0.2
107,719 - 0.2
107,720 - 1.0
107,721 - 0.6
107,729 + -0.6
107,730 - -1.1
107,731 + 2.4
107,738 + -1.0
107,739 + -2.1
107,739 + -1.7
107,756 - -1.6
107,763 + -0.8
107,799 + 0.5
107,804 + -0.7
107,804 - -0.1
107,808 + -2.5
107,816 - -0.1
107,838 - -0.8
107,838 - 0.2
107,853 + 1.5
107,865 + 0.7
107,866 + 0.1
107,866 + -0.6
107,882 - -0.2
107,883 - 0.6
107,891 - 0.3
107,895 - 1.7
107,896 + 0.4
107,897 - 1.7
107,898 + -0.3
107,898 + -0.2
107,907 - 0.8
107,909 - 0.0
107,909 - -1.9
107,910 + -0.6
107,910 + 0.8
107,913 + 0.4
107,914 - 0.7
107,914 - 1.6
107,921 + -1.4
107,923 - -0.5
107,928 + -2.5
107,929 - 1.5
107,933 - 0.1
107,943 + 9340 mRNA_972 0.11 -1.0
107,948 - 9340 mRNA_972 0.11 0.5
107,951 - 9340 mRNA_972 0.11 0.5
107,954 + 9340 mRNA_972 0.12 -0.9
107,958 - 9340 mRNA_972 0.12 0.8
107,962 + 9340 mRNA_972 0.13 -0.3
107,966 + 9340 mRNA_972 0.13 -1.2
107,978 + 9340 mRNA_972 0.14 -0.6
107,980 - 9340 mRNA_972 0.14 0.6
108,046 + 9340 mRNA_972 0.21 -0.8
108,065 + 9340 mRNA_972 0.23 1.7
108,071 - 9340 mRNA_972 0.24 -0.4
108,084 + 9340 mRNA_972 0.25 -0.1
108,089 + 9340 mRNA_972 0.26 -2.0
108,099 - 9340 mRNA_972 0.27 0.9
108,114 + 9340 mRNA_972 0.28 0.0
108,117 - 9340 mRNA_972 0.29 2.5
108,127 - 9340 mRNA_972 0.30 0.7
108,128 - 9340 mRNA_972 0.30 -0.5
108,131 + 9340 mRNA_972 0.30 -0.1
108,131 + 9340 mRNA_972 0.30 0.1
108,139 - 9340 mRNA_972 0.31 -0.1
108,145 + 9340 mRNA_972 0.32 -0.1
108,147 - 9340 mRNA_972 0.32 0.2
108,166 + 9340 mRNA_972 0.34 -1.4
108,169 + 9340 mRNA_972 0.34 0.5
108,192 - 9340 mRNA_972 0.36 -0.5
108,197 + 9340 mRNA_972 0.37 -0.2
108,215 + 9340 mRNA_972 0.39 -0.1
108,220 + 9340 mRNA_972 0.39 -1.0
108,228 - 9340 mRNA_972 0.40 1.1
108,231 - 9340 mRNA_972 0.40 -1.6
108,233 - 9340 mRNA_972 0.41 0.1
108,233 + 9340 mRNA_972 0.41 1.8
108,234 - 9340 mRNA_972 0.41 -0.4
108,247 - 9340 mRNA_972 0.42 1.5
108,248 + 9340 mRNA_972 0.42 -0.3
108,250 + 9340 mRNA_972 0.42 0.2
108,252 - 9340 mRNA_972 0.43 -0.9
108,254 + 9340 mRNA_972 0.43 -2.3
108,257 - 9340 mRNA_972 0.43 0.5
108,259 + 9340 mRNA_972 0.43 0.5
108,261 - 9340 mRNA_972 0.44 1.2
108,265 - 9340 mRNA_972 0.44 0.7
108,266 + 9340 mRNA_972 0.44 -0.2
108,270 - 9340 mRNA_972 0.44 -0.4
108,270 - 9340 mRNA_972 0.44 0.2
108,271 + 9340 mRNA_972 0.45 0.4
108,271 + 9340 mRNA_972 0.45 1.0
108,273 - 9340 mRNA_972 0.45 -0.1
108,286 - 9340 mRNA_972 0.46 -0.3
108,293 - 9340 mRNA_972 0.47 -0.4
108,297 - 9340 mRNA_972 0.47 0.3
108,298 - 9340 mRNA_972 0.47 -0.1
108,298 + 9340 mRNA_972 0.47 -0.5
108,298 + 9340 mRNA_972 0.47 0.1
108,304 - 9340 mRNA_972 0.48 -0.8
108,314 - 9340 mRNA_972 0.49 -1.8
108,328 + 9340 mRNA_972 0.50 0.5
108,338 + 9340 mRNA_972 0.51 0.0
108,357 + 9340 mRNA_972 0.53 -0.0
108,378 + 9340 mRNA_972 0.56 -0.2
108,378 - 9340 mRNA_972 0.56 1.3
108,390 + 9340 mRNA_972 0.57 -1.5
108,398 - 9340 mRNA_972 0.58 0.5
108,399 - 9340 mRNA_972 0.58 -0.0
108,400 - 9340 mRNA_972 0.58 -0.5
108,409 + 9340 mRNA_972 0.59 0.2
108,424 + 9340 mRNA_972 0.60 3.0
108,433 + 9340 mRNA_972 0.61 -0.5
108,455 + 9340 mRNA_972 0.64 -0.3
108,460 + 9340 mRNA_972 0.64 0.4
108,461 + 9340 mRNA_972 0.64 0.2
108,462 - 9340 mRNA_972 0.64 1.0
108,472 + 9340 mRNA_972 0.65 -0.9
108,474 + 9340 mRNA_972 0.66 1.2
108,496 - 9340 mRNA_972 0.68 -0.3
108,497 + 9340 mRNA_972 0.68 0.3
108,502 + 9340 mRNA_972 0.68 -0.2
108,503 + 9340 mRNA_972 0.69 -0.0
108,504 + 9340 mRNA_972 0.69 1.8
108,505 + 9340 mRNA_972 0.69 -0.2
108,506 + 9340 mRNA_972 0.69 -0.8
108,507 - 9340 mRNA_972 0.69 0.4
108,516 + 9340 mRNA_972 0.70 2.0
108,524 - 9340 mRNA_972 0.71 -0.8
108,534 - 9340 mRNA_972 0.72 0.6
108,535 - 9340 mRNA_972 0.72 0.8
108,536 - 9340 mRNA_972 0.72 0.2
108,542 + 9340 mRNA_972 0.73 0.2
108,545 - 9340 mRNA_972 0.73 -0.7
108,546 - 9340 mRNA_972 0.73 0.8
108,547 + 9340 mRNA_972 0.73 -0.7
108,554 - 9340 mRNA_972 0.74 0.5
108,555 + 9340 mRNA_972 0.74 -1.2
108,558 + 9340 mRNA_972 0.74 1.7
108,559 + 9340 mRNA_972 0.74 0.5
108,588 + 9340 mRNA_972 0.77 -0.1
108,597 - 9340 mRNA_972 0.78 -0.2
108,626 + 9340 mRNA_972 0.81 0.8
108,647 + 9340 mRNA_972 0.83 1.2
108,651 - 9340 mRNA_972 0.84 -0.9
108,666 + 9340 mRNA_972 0.85 -0.8
108,762 + -1.6
108,772 + 0.2
108,772 + -0.3
108,783 + -2.0
108,789 - 3.0
108,794 - 0.4
108,796 + 1.0
108,801 + 1.3
108,802 + 0.3
108,803 + -1.0
108,807 + 0.9
108,807 + -0.0
108,808 + 0.9
108,816 - 0.2
108,818 + 1.3
108,830 - -0.9
108,836 - -1.1
108,930 - -1.6
108,940 + 1.9
108,947 - -0.6
108,972 - 1.7
108,988 + -0.7
109,059 + -2.3
109,094 - 1.9
109,098 + -0.4
109,100 - 0.5
109,238 + -2.9
109,682 - 9341 mRNA_973 0.17 0.6