Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_948

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_947: 9315 - K00623 CHAT choline O-acetyltransferase, at 38984 to 41581 9315 mRNA_948: 9316 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 41701 to 44858 9316 mRNA_949: 9317 - KOG1268 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains, at 45301 to 46716 9317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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41,053 - 9315 mRNA_947 0.80 0.9
41,213 + 9315 mRNA_947 0.86 -0.1
41,256 - 9315 mRNA_947 0.87 -1.0
41,491 + 0.2
41,509 - -0.6
41,539 + 1.3
41,611 - 0.3
41,633 - -1.5
41,633 - 0.8
41,645 + 0.2
41,656 + -0.4
41,659 + 1.3
41,665 + -0.7
41,671 + 1.6
41,806 - -0.9
41,993 + 2.1
42,116 - 9316 mRNA_948 0.13 0.0
42,122 + 9316 mRNA_948 0.13 -0.5
42,180 + 9316 mRNA_948 0.15 0.4
42,265 + 9316 mRNA_948 0.18 -0.3
42,398 - 9316 mRNA_948 0.22 0.4
42,441 + 9316 mRNA_948 0.23 0.0
42,665 - 9316 mRNA_948 0.31 -2.7
42,879 + 9316 mRNA_948 0.37 0.2
43,018 - 9316 mRNA_948 0.42 0.8
43,143 + 9316 mRNA_948 0.46 0.2
43,150 - 9316 mRNA_948 0.46 2.8
43,605 - 9316 mRNA_948 0.60 0.6
43,688 - 9316 mRNA_948 0.63 -1.4
43,864 + 9316 mRNA_948 0.68 -1.1
44,000 - 9316 mRNA_948 0.73 0.8
44,001 - 9316 mRNA_948 0.73 -0.3
44,022 + 9316 mRNA_948 0.73 0.6
44,172 - 9316 mRNA_948 0.78 -0.3
44,297 - 9316 mRNA_948 0.82 -1.2
44,503 - 9316 mRNA_948 0.89 0.2
44,900 + 1.1
45,025 + -0.0
45,026 - 0.2
45,037 + -0.1
45,044 + -0.1
45,056 + 0.3
45,188 + -0.2
45,342 + 2.2
45,465 + 9317 mRNA_949 0.12 0.2
45,482 - 9317 mRNA_949 0.13 -0.2
45,484 + 9317 mRNA_949 0.13 0.0
45,586 + 9317 mRNA_949 0.20 0.1
45,590 + 9317 mRNA_949 0.20 0.4
45,590 - 9317 mRNA_949 0.20 0.9
45,596 - 9317 mRNA_949 0.21 2.3
45,619 + 9317 mRNA_949 0.22 -0.6
45,755 - 9317 mRNA_949 0.32 -0.0