Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1838 to 6021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1 + -1.3
1 + 1.1
1 + -0.3
1 + 0.5
1 + -2.4
2 + 0.6
2 + -1.6
5 + 1.3
18 + 1.3
30 + -0.6
37 + -1.2
37 + -1.1
41 + 0.2
42 + -0.4
44 + -0.3
49 + 0.5
49 + -0.1
50 + 0.3
54 + 0.0
58 - 0.5
60 - -0.6
60 + 0.0
60 - -1.1
61 - -0.9
61 + -1.2
63 + 0.4
63 + 0.9
63 + 0.6
63 + 0.6
63 + 0.3
63 + -0.6
64 + 0.9
66 - 0.6
66 + -1.0
70 + -0.9
70 + -0.6
70 - -0.4
71 + -1.0
73 + 0.2
75 - 0.1
77 - 0.1
78 + 0.4
78 - -1.0
78 + -0.1
78 + 0.7
78 + -0.3
78 + 0.0
78 + 1.0
78 + 0.8
78 + 0.3
79 + -0.9
81 - -1.4
81 - -0.7
82 + 0.5
85 + 1.5
104 + -0.4
126 + 0.6
126 + 0.7
128 - -0.7
135 + -0.1
142 + -0.1
150 + 1.8
154 + -1.5
157 + 2.4
171 - 0.3
171 + -0.8
172 + 0.1
172 + -0.6
175 - -1.2
176 - 0.1
177 - 3.0
177 - 0.2
191 - -0.9
192 + 0.6
192 + 0.3
192 + -0.2
193 + 0.1
193 + -1.2
193 + -1.9
198 - -1.2
218 + 2.1
225 + 0.8
235 + -1.3
242 + -0.8
263 - 1.1
293 + -0.7
303 + 1.9
333 - -1.3
339 - 0.2
348 + -0.0
349 + -1.0
377 - 0.5
381 - 0.2
469 + -0.5
487 - 9298 mRNA_930 0.10 -1.9
722 + 9298 mRNA_930 0.29 -1.7
1,641 - 0.7
1,656 - -1.6
1,768 - -0.1
1,778 - 3.1
1,794 + 1.3