Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_877

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_876: 9244 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 2089626 to 2091862 9244 mRNA_877: 9245 - K07425 CYP4A alkane 1-monooxygenase, at 2092667 to 2095053 9245 mRNA_878: 9246 - K14692 SLC30A5_7, ZNT5_7, MTP, MSC2 solute carrier family 30 (zinc transporter), member 5/7, at 2095411 to 2098626 9246

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,091,717 + -0.9
2,092,031 - -0.2
2,092,153 - -1.1
2,092,159 - -1.3
2,092,163 + -0.7
2,092,307 + -0.7
2,092,323 + -1.0
2,092,447 - -1.5
2,092,562 + -0.9
2,092,877 + -0.3
2,093,049 + 9245 mRNA_877 0.16 -1.9
2,093,444 - 9245 mRNA_877 0.33 0.3
2,093,462 + 9245 mRNA_877 0.33 -0.6
2,093,484 - 9245 mRNA_877 0.34 0.7
2,093,657 - 9245 mRNA_877 0.41 1.0
2,093,780 - 9245 mRNA_877 0.47 -0.8
2,093,796 + 9245 mRNA_877 0.47 1.1
2,094,626 - 9245 mRNA_877 0.82 -0.7
2,094,771 - 9245 mRNA_877 0.88 1.0
2,095,005 + -1.0
2,095,042 + -0.1
2,095,197 + -1.9
2,095,329 + 1.9
2,095,329 + -0.1
2,095,330 + -0.7
2,095,364 + -1.8
2,095,490 - 0.0
2,095,493 + -0.0
2,095,497 + 0.4
2,095,503 - 0.2
2,095,634 + -0.2
2,095,774 - 9246 mRNA_878 0.11 -0.8
2,095,774 - 9246 mRNA_878 0.11 0.5