Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_861

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_860: 9228 - HMMPfam-PX domain-PF00787,HMMPfam-BAR domain-PF03114,ProSiteProfiles-PX domain profile.-PS50195,SMART-PhoX homologous domain, present in p47phox and p40phox.-SM00312,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF64268, at 2061433 to 2063574 9228 mRNA_861: 9229 - K03513 POLM DNA polymerase mu, at 2063792 to 2065447 9229 mRNA_862: 9230 - KOG2867 Phosphotyrosyl phosphatase activator, at 2065733 to 2067114 9230

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,063,047 - 9228 mRNA_860 0.75 -3.3
2,063,329 - 9228 mRNA_860 0.89 -2.1
2,063,476 - -1.6
2,063,496 + -0.9
2,063,613 - 0.1
2,063,637 + -0.2
2,063,645 - -0.7
2,063,647 + -1.6
2,063,775 + 0.7
2,063,945 + -0.1
2,064,072 + 9229 mRNA_861 0.17 -0.6
2,064,375 + 9229 mRNA_861 0.35 0.1
2,064,499 + 9229 mRNA_861 0.43 0.3
2,064,511 + 9229 mRNA_861 0.43 2.8
2,064,929 + 9229 mRNA_861 0.69 1.8
2,064,936 - 9229 mRNA_861 0.69 0.3
2,064,949 - 9229 mRNA_861 0.70 -0.6
2,065,238 - 9229 mRNA_861 0.87 -0.5
2,065,358 - 2.7
2,065,373 + 1.5
2,065,381 + -0.3
2,065,430 + -0.2
2,065,501 + -1.9
2,065,509 + -0.9
2,065,510 + 1.1
2,065,510 - 0.6
2,065,517 - -0.6
2,065,524 + 1.1
2,065,524 - 1.6
2,065,525 + 0.1
2,065,536 + 1.2
2,065,537 - 0.6
2,065,537 - 2.8
2,065,540 + -0.8
2,065,545 - 0.5
2,065,546 - 1.2
2,065,546 - -0.5
2,065,547 + 0.2
2,065,548 + -0.3
2,065,551 + -2.8
2,065,557 + 1.5
2,065,559 - 0.3
2,065,559 + -2.4
2,065,560 + -0.9
2,065,561 + -2.3
2,065,562 + -1.2
2,065,562 - -0.0
2,065,566 + -0.2
2,065,567 + -1.7
2,065,568 - -3.7
2,065,568 + 1.1
2,065,569 - -0.5
2,065,570 + 1.0
2,065,571 - 1.0
2,065,572 - -0.2
2,065,574 - 1.4
2,065,574 - -0.8
2,065,575 - -1.0
2,065,575 + 1.8
2,065,575 + 2.3
2,065,576 + 0.7
2,065,576 - -0.8
2,065,577 - -0.9
2,065,577 - 0.8
2,065,578 + -0.4
2,065,579 + 0.2
2,065,581 - 1.1
2,065,582 + 0.5
2,065,582 + -0.4
2,065,585 + -0.5
2,065,586 + 1.2
2,065,588 + 1.8
2,065,602 - 0.8
2,065,646 + 0.1
2,065,668 - -1.1
2,065,669 + 1.3
2,065,673 + -1.2
2,065,674 - -1.3
2,065,679 - -0.2
2,065,685 + -1.1
2,065,730 + -0.7
2,065,815 - 2.9
2,065,824 + -0.0
2,065,827 - 0.1
2,065,957 - 9230 mRNA_862 0.16 -0.7
2,065,960 - 9230 mRNA_862 0.16 -1.3
2,065,962 + 9230 mRNA_862 0.17 2.7
2,065,977 - 9230 mRNA_862 0.18 -0.2
2,065,989 + 9230 mRNA_862 0.19 0.2
2,066,101 + 9230 mRNA_862 0.27 -0.9
2,066,247 + 9230 mRNA_862 0.37 0.1
2,066,268 + 9230 mRNA_862 0.39 -1.1
2,066,346 + 9230 mRNA_862 0.44 -1.9