Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_860

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_859: 9227 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 2057980 to 2061220 9227 mRNA_860: 9228 - HMMPfam-PX domain-PF00787,HMMPfam-BAR domain-PF03114,ProSiteProfiles-PX domain profile.-PS50195,SMART-PhoX homologous domain, present in p47phox and p40phox.-SM00312,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF64268, at 2061433 to 2063574 9228 mRNA_861: 9229 - K03513 POLM DNA polymerase mu, at 2063792 to 2065447 9229

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,060,541 - 9227 mRNA_859 0.79 0.4
2,060,593 + 9227 mRNA_859 0.81 -0.2
2,060,696 - 9227 mRNA_859 0.84 0.1
2,060,704 + 9227 mRNA_859 0.84 -0.1
2,060,781 - 9227 mRNA_859 0.86 -0.7
2,060,785 + 9227 mRNA_859 0.87 0.2
2,060,838 - 9227 mRNA_859 0.88 -0.6
2,060,868 + 9227 mRNA_859 0.89 -0.1
2,060,876 + 9227 mRNA_859 0.89 0.4
2,061,055 + -0.6
2,061,068 - -1.9
2,061,121 - -0.3
2,061,149 - 0.5
2,061,163 + 0.2
2,061,218 - -0.7
2,061,328 - 0.7
2,061,446 + -1.4
2,061,587 + 0.3
2,061,908 + 9228 mRNA_860 0.22 0.0
2,062,160 + 9228 mRNA_860 0.34 -1.6
2,063,047 - 9228 mRNA_860 0.75 -3.3
2,063,329 - 9228 mRNA_860 0.89 -2.1
2,063,476 - -1.6
2,063,496 + -0.9
2,063,613 - 0.1
2,063,637 + -0.2
2,063,645 - -0.7
2,063,647 + -1.6
2,063,775 + 0.7
2,063,945 + -0.1
2,064,072 + 9229 mRNA_861 0.17 -0.6
2,064,375 + 9229 mRNA_861 0.35 0.1
2,064,499 + 9229 mRNA_861 0.43 0.3
2,064,511 + 9229 mRNA_861 0.43 2.8