Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_845

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_844: 9212 - KOG1111 N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase, at 2022494 to 2024852 9212 mRNA_845: 9213 - KOG3346 Phosphatidylethanolamine binding protein, at 2025421 to 2026759 9213 mRNA_846: 9214 - KOG2710 Rho GTPase-activating protein, at 2027534 to 2029466 9214

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,024,475 - 9212 mRNA_844 0.84 -1.0
2,024,488 + 9212 mRNA_844 0.85 -1.7
2,024,951 + 0.8
2,024,969 + -0.6
2,025,087 - 0.0
2,025,125 - 0.4
2,025,285 + -1.5
2,025,401 - 4.0
2,025,404 - -0.2
2,025,412 + 0.4
2,025,594 - 9213 mRNA_845 0.13 -1.6
2,025,852 + 9213 mRNA_845 0.32 0.4
2,026,343 - 9213 mRNA_845 0.69 -0.2
2,026,402 + 9213 mRNA_845 0.73 -0.4
2,026,444 + 9213 mRNA_845 0.76 -0.5
2,026,451 + 9213 mRNA_845 0.77 -0.3
2,026,556 - 9213 mRNA_845 0.85 -0.5
2,026,686 - 0.8
2,026,688 - -0.2
2,026,852 - 0.3
2,026,863 + -0.0
2,026,865 - -1.1
2,027,000 - -0.5
2,027,161 + 0.9
2,027,169 + 2.0
2,027,321 + -0.3