Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_843

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_842: 9210 - K02148 ATPeV1C, ATP6C V-type H+-transporting ATPase subunit C, at 2017020 to 2018936 9210 mRNA_843: 9211 - KOG2262 Sexual differentiation process protein ISP4, at 2019044 to 2022236 9211 mRNA_844: 9212 - KOG1111 N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase, at 2022494 to 2024852 9212

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,018,921 + 1.3
2,019,052 - 0.8
2,019,055 - -0.5
2,019,256 - 0.4
2,019,371 - 9211 mRNA_843 0.10 0.9
2,019,639 - 9211 mRNA_843 0.19 1.2
2,019,645 + 9211 mRNA_843 0.19 -2.0
2,019,780 - 9211 mRNA_843 0.23 -0.4
2,019,978 - 9211 mRNA_843 0.29 -0.6
2,020,082 + 9211 mRNA_843 0.33 0.5
2,020,194 - 9211 mRNA_843 0.36 -0.5
2,020,720 + 9211 mRNA_843 0.52 3.2
2,020,783 - 9211 mRNA_843 0.54 -0.5
2,020,825 - 9211 mRNA_843 0.56 -1.7
2,021,740 - 9211 mRNA_843 0.84 -0.5
2,021,871 - 9211 mRNA_843 0.89 2.4
2,021,946 - -2.0
2,022,265 + -0.2
2,022,845 + 9212 mRNA_844 0.15 -0.9
2,023,016 - 9212 mRNA_844 0.22 -1.1
2,023,020 + 9212 mRNA_844 0.22 0.3