Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_817

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_816: 9184 - KOG0783 Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains, at 1943601 to 1948343 9184 mRNA_817: 9185 - K02208 CDK8_11 cyclin-dependent kinase 8/11, at 1948708 to 1950488 9185 mRNA_818: 9186 - HMMPfam-PQ loop repeat-PF04193, at 1950647 to 1952582 9186

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,947,803 + 9184 mRNA_816 0.89 0.2
1,948,188 - 0.7
1,948,288 - 1.2
1,948,292 - 1.5
1,948,550 - 1.6
1,948,565 - 0.2
1,948,706 + -0.1
1,949,025 + 9185 mRNA_817 0.18 0.9
1,949,464 - 9185 mRNA_817 0.42 -3.0
1,949,579 - 9185 mRNA_817 0.49 0.0
1,950,009 + 9185 mRNA_817 0.73 1.9
1,950,352 + -2.0
1,950,612 + -1.1
1,951,205 - 9186 mRNA_818 0.29 -0.5
1,951,254 - 9186 mRNA_818 0.31 -0.4
1,951,486 - 9186 mRNA_818 0.43 -0.5