Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_735

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_734: 9102 - K08149 SLC2A12, GLUT12 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 12, at 1750869 to 1753209 9102 mRNA_735: 9103 - KOG0175 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2, at 1753965 to 1755090 9103 mRNA_736: 9104 - K00034 gdh glucose 1-dehydrogenase, at 1755244 to 1756596 9104

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,752,987 - 0.1
1,753,267 - 0.3
1,753,288 + -2.5
1,753,292 + -0.2
1,753,300 + -0.2
1,753,360 - -0.3
1,753,406 - -0.6
1,753,532 - -1.6
1,753,689 - 0.8
1,753,793 - -1.9
1,753,834 + -1.5
1,753,844 - 1.2
1,754,311 + 9103 mRNA_735 0.31 -0.8
1,754,450 + 9103 mRNA_735 0.43 -0.3
1,754,489 + 9103 mRNA_735 0.47 -0.1
1,754,587 - 9103 mRNA_735 0.55 -2.0
1,754,720 - 9103 mRNA_735 0.67 0.2
1,754,751 - 9103 mRNA_735 0.70 0.6
1,754,831 - 9103 mRNA_735 0.77 0.6
1,755,560 - 9104 mRNA_736 0.23 0.5
1,755,592 - 9104 mRNA_736 0.26 -1.3
1,755,984 - 9104 mRNA_736 0.55 0.3