Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_724

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_723: 9091 - K07127 uraH, pucM, hiuH 5-hydroxyisourate hydrolase, at 1722992 to 1724496 9091 mRNA_724: 9092 - HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324, at 1724754 to 1725732 9092 mRNA_725: 9093 - KOG2702 Predicted panthothenate kinase/uridine kinase-related protein, at 1725841 to 1726998 9093

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,723,896 - 9091 mRNA_723 0.60 -1.3
1,723,902 - 9091 mRNA_723 0.60 0.8
1,723,909 + 9091 mRNA_723 0.61 -0.4
1,724,051 - 9091 mRNA_723 0.70 -0.0
1,724,057 - 9091 mRNA_723 0.71 0.3
1,724,071 - 9091 mRNA_723 0.72 0.1
1,724,072 + 9091 mRNA_723 0.72 -1.1
1,724,228 - 9091 mRNA_723 0.82 0.1
1,724,229 + 9091 mRNA_723 0.82 1.0
1,724,240 + 9091 mRNA_723 0.83 0.6
1,724,349 - 0.1
1,724,457 - 0.1
1,724,472 - 0.8
1,724,473 - 0.5
1,724,473 - -0.2
1,724,483 - 0.6
1,724,484 - -1.4
1,724,485 - -0.6
1,724,486 + -0.7
1,724,489 + 0.7
1,724,492 + 2.1
1,724,496 - -2.0
1,724,550 - 0.2
1,724,565 - -0.9
1,724,573 + -3.2
1,724,638 - 0.2
1,724,670 - -0.2
1,724,672 - -0.2
1,724,672 - 0.5
1,724,678 - 0.3
1,724,684 - -1.3
1,724,687 + 0.1
1,724,688 + -0.2
1,724,690 - 0.1
1,724,699 + -0.0
1,724,702 - 0.7
1,724,704 + 0.0
1,724,710 - 0.9
1,724,711 - -1.1
1,724,796 + 0.7
1,724,830 - -0.1
1,724,874 - 9092 mRNA_724 0.12 1.9
1,724,887 + 9092 mRNA_724 0.14 -1.0
1,724,984 + 9092 mRNA_724 0.23 -1.4
1,724,998 - 9092 mRNA_724 0.25 -0.6
1,725,420 + 9092 mRNA_724 0.68 -0.6
1,726,641 + 9093 mRNA_725 0.69 0.3
1,726,713 - 9093 mRNA_725 0.75 -0.9