Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_597

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_597: 8965 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 1435317 to 1436977 8965 mRNA_598: 8966 - ProSiteProfiles-F-box domain profile.-PS50181, at 1437888 to 1441324 8966

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,434,639 + -0.5
1,434,768 - 0.7
1,434,961 + -0.6
1,435,058 + -0.3
1,435,231 + 0.7
1,435,246 - -1.0
1,435,370 - -0.3
1,435,514 - 8965 mRNA_597 0.12 0.8
1,435,663 - 8965 mRNA_597 0.21 2.8
1,435,957 - 8965 mRNA_597 0.39 -0.6
1,436,213 - 8965 mRNA_597 0.54 1.2
1,436,632 - 8965 mRNA_597 0.79 -0.2
1,436,952 - 1.8
1,436,954 + -0.6
1,437,210 - -0.1
1,437,218 + 0.1
1,437,219 - -3.1
1,437,222 + 0.9
1,437,223 + 0.3
1,437,242 + -2.1
1,437,243 - 1.7
1,437,255 - -0.6
1,437,281 - 0.6
1,437,295 - 0.6
1,437,301 + 1.1
1,437,321 - -0.2
1,437,329 - -0.1
1,437,334 + -0.9
1,437,349 + 0.1
1,437,360 - 0.3
1,437,383 + 0.0
1,437,399 - 0.2
1,437,401 - -1.2
1,437,402 - -1.8
1,437,456 - 1.0
1,437,505 + -1.0
1,437,534 - 0.6
1,437,558 + 0.6
1,437,558 + 0.3
1,437,716 - 0.3
1,437,827 + 0.8
1,437,862 + -0.2